idh3b (LOC106565197)


Basic Information

Item Value
gene id idh3b
gene name LOC106565197
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47728424 ~ 47743582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568639.2
AATTGTACTCCAGtgtagtaggtggcggtaatacaacatttattggatgccaactgcGCTTAAACCTCGAAGAAGAATTCATTTCCTCCACATTCTTTCTGGATCATGATGGCTGCCGCCTTGAGAGGAAGCGTTGTAACATTGGCCAAGGGCCTTACTGGCATTGGTCCGCGGTGGCAGCAGCTGGCTGCCCGGTCCCTCAATATGACCGCCAGTCTGGGTGGGCCTGAGGCACCCCCGGCCCGTGCCGACGCCACATTCAAAGTCACCATGGTGCCCGGGGACGGAGTAGGACCTGAACTGATGACTGCTGTCAAGGAGGTGTTCAAGgcggGTGACGTCCCAGTGGAGTTTGAGGAGTTCCACCTAAGTGAGGTGCAGCACATGGACAGCGACGAGAAGCTGGAGCAGGTGTTGGCCTCCATGAAGACCAACAGGGTGGCAATGAAAGGAAAGATTAACACCCCCATGGAGTTCAAAGGGGAGCTGGCTGGCTTCGAGATGAAGATTAGGCGTAGGCTGGACCTGTTTGCAAACGTGGTACACGTGAACAGCCTGCCCGGCTACAGCACCCGCCACAACAACCTGGACCTGGTCATCATCCGAGAGCAGACTGAGGGAGAGTATAGCTCTCTGGAGCACGAGAGCGTGCCTGGAGTGATTGAATGTCTGAAGATCATCACTAGGGAGAAGTCTCGGCGCATCGCCAAGTTTGCCTTCGACTACGCCACCAAGAAGGGTCGCAGCAAGGTCACGGCGGTCCACAAGGCCAACATCATGAAGCTTGCAGATGGCCTGTTCCTACAGTGCTGTGCTGAGGTGGCAGAGCTGTATCCCAAGATCAAATATGAGAACATCATCATAGACAACTGTTGCATGCAGCTGGTCCAGAACCCATACCAGTTTGACGTGCTGGTGATGCCCAACCTTTATGGCAACATCATTGACAACCTGGCCGCTGGGCTGGTCGGTGGGGCAGGAGTGGTGCCAGGAGAGAGCTACAGCGCCGAGTACGCCGTGTTTGAGACCGGAGCTCGGCACCCCTTTGCCCAGGCTGTAGGCAGGAACATCGCCAACCCCACGGCCATGCTGCTCAGTGCTGCCAACATGCTCCATCACCTCAATCTGGAATACCACTCCAATATGGTGTCAGATGCTGTCAGGAAGGTCATCAAACAGGGCaaggtgCGGACGCGAGACCTGGGCGGTTACAGCACGACCGGGGACTTTGTGCAAGCCGTTGTGGGGAACCTCCGCCACCGACCCATGTGCTAAAGAAGTCCCGATCCCCTGAACGCCCTGCCCTTTTCTGTAAACTGGACGGCCAACCAAATATAATTTGGATATATTGAACCCAATATTGCCACATTCCCTAAACTTTACCCCACTAACTTTTTTGCTCACTTTCCCACTAAACTAACACTTACGTCACTCTTGGCAGCTCTCCCCTCCGCTTTCTTTTCATATTCCTCTTTACGCGCTCGGCGTATCCTCTATTTTGTTTTTCTCTCTTACTCAAATTCAAAAATTATTGGCCAAAGCAGATAATTATcgtcatttttttaaaatttatttttacCAAAATCGTCCATTTATGCTGTGGACTTCTATTTTCTCCCAGTCTTTTCCTTGTGGAACCCTTTCTCCAACTGAGCACCCCCTGCTTGGTGCCGTTTCTtgcttctctcttttcctccatgTCAGCCTGTTCTTTTGTACTGCCTCTGCTGTTGGCTGCACTCTTCTATAAGCTGTTCTAGAATCTTCTCTGTTTTTGTCGGCTCTACTAACTCCCTATAGTCTACTCTCCTATTTGTCAGCTAACTCTCTTTCCCTCCACTCcaactcttcctcttctctctctgagctgtttcATTGTCTCTGTGTGGACAAGCATATGATCTTATATTACATTGACCTCCACTAGTCCAGCCTCGCAGTCCATACCGGTCGGGGCCGTGTGTTATTCAGCAGTATTGGTCAAGCAGGTTTCGAGCCACGGGGACAATTCACCGACGCCAAAGCGAGTGAGAAATCTCTACCACAGCACTGTATCAATGGATATCTGGCCTGCCATTTCACAGTCCTGAGTCGTGCTAGGCATATACAGTACGTCGTTCATAGCCCTTTGACTCTATGTGCAGACTTTTCTTGGCTTGGAGTCCAGGCTACCGTGGTAGCATATGCGTAGACTACCGTAGCTGTAGACTTTCGGTCATTGCGCtgacgctagttagcattggctcttGAAACTACTCTAACTGCCTTCATTCTGTACGCAGAgacaaaaatggtatccatgagttcgtctgactctgggtaagtagaaaaacAGCTTAATTGCCAGAATCTTCCAGTATCCTTTTTAACTGGCCTTTTCAATCACAACCTTTAATTACGTGCACAGTCAGGTTAAGACTGTTTTAGTTgctgtaaaaaatgtttttttaaaactgCACTGGTTTCCACTGAGTCATCATAAACATGGAAGTTTCTCACGAACACATATCAGCACCACTGTCTTAAAGGAGGCAGGATGTAGAGGTCATTCCTGAGATGGGTGACATTTTTCAGAATCTACAATCAATGTTTTGATATTGTTGCGTTAGCAGGGATGCTAACACGTTAGCCAATTTCACCGTTTGGTATTTGTAGCTAGCTTCATAGAACCTTTTAATTATGAATTGTCGCTCATCTGCATACTCTAGTCATCACTAGTGACTAAAAATAAATCTTAATAATTTGTTCACTGTGTATGCTGTAAAACGCACATAATGTGTATCGTAGAGGTCAATATCTAGGTAGCTTTTTGCTGGAGTTGTGACCTTGGAGATCCATCGTGTTTGGCTGTTCAGTCAGGCAAAGCTCTTTCATCATTAAATTTGCAAACGAACAAGCCACTGTAACTCGAGCCTACGACCAGCCTTGCCTGAGTTCACTTTGGCTTTGGACTTTGTGCCAAAAGTCCATTAAATTATATATTGGTTATGTTGCTGATCTCAGTGGTAGCATTTCTATTAGAGACTTAGACTGGCATGTGTCAGTCAGTCATTGGGACTTCAAATGTATTGGCTTATGTCATATTATCATGGTCAAATACTGAAGAATAAAAGATGGGGAAATGTT
>XM_021568640.2
AATTGTACTCCAGtgtagtaggtggcggtaatacaacatttattggatgccaactgcGCTTAAACCTCGAAGAAGAATTCATTTCCTCCACATTCTTTCTGGATCATGATGGCTGCCGCCTTGAGAGGAAGCGTTGTAACATTGGCCAAGGGCCTTACTGGCATTGGTCCGCGGTGGCAGCAGCTGGCTGCCCGGTCCCTCAATATGACCGCCAGTCTGGGTGGGCCTGAGGCACCCCCGGCCCGTGCCGACGCCACATTCAAAGTCACCATGGTGCCCGGGGACGGAGTAGGACCTGAACTGATGACTGCTGTCAAGGAGGTGTTCAAGgcggGTGACGTCCCAGTGGAGTTTGAGGAGTTCCACCTAAGTGAGGTGCAGCACATGGACAGCGACGAGAAGCTGGAGCAGGTGTTGGCCTCCATGAAGACCAACAGGGTGGCAATGAAAGGAAAGATTAACACCCCCATGGAGTTCAAAGGGGAGCTGGCTGGCTTCGAGATGAAGATTAGGCGTAGGCTGGACCTGTTTGCAAACGTGGTACACGTGAACAGCCTGCCCGGCTACAGCACCCGCCACAACAACCTGGACCTGGTCATCATCCGAGAGCAGACTGAGGGAGAGTATAGCTCTCTGGAGCACGAGAGCGTGCCTGGAGTGATTGAATGTCTGAAGATCATCACTAGGGAGAAGTCTCGGCGCATCGCCAAGTTTGCCTTCGACTACGCCACCAAGAAGGGTCGCAGCAAGGTCACGGCGGTCCACAAGGCCAACATCATGAAGCTTGCAGATGGCCTGTTCCTACAGTGCTGTGCTGAGGTGGCAGAGCTGTATCCCAAGATCAAATATGAGAACATCATCATAGACAACTGTTGCATGCAGCTGGTCCAGAACCCATACCAGTTTGACGTGCTGGTGATGCCCAACCTTTATGGCAACATCATTGACAACCTGGCCGCTGGGCTGGTCGGTGGGGCAGGAGTGGTGCCAGGAGAGAGCTACAGCGCCGAGTACGCCGTGTTTGAGACCGGAGCTCGGCACCCCTTTGCCCAGGCTGTAGGCAGGAACATCGCCAACCCCACGGCCATGCTGCTCAGTGCTGCCAACATGCTCCATCACCTCAATCTGGAATACCACTCCAATATGGTGTCAGATGCTGTCAGGAAGGTCATCAAACAGGGCaagGTGCGCACAGGAGACCTGGGGGGCTATGCCACAAGCGACGAGTTCACCAGAGCTGTCATCGCCAACCTAGCCATCTGAGCTAGCCTCTCAAACACACATTCTTTATTTTACTCCCTTCAAACTAGTCTCTCTGCATTGACCACTCAAACAGCTGCGCACCAGATTAAATCCTGACCCATGCTCAACAACAGCTAACACCCATAGACTGAAATGCATACAAACCTCAAAATATGTAAAAATACACACAATGAAATTGAGGACCGGTTACATAAATGAGAAGACAATATGGGGACGACACCTACAGTCTTGTGAACGgtaccaaaataaatgttttcccattcAACAATAGTTGTATGGAACTTGTAAGTCACATTCCACATTCTCTACCAGAGTGGTGTTCTTCAATGAATGGGTCTTGTTTAGATATTCATACAAGATACATGTACTATATCagtatattttatttattcacTACAAGTGTTATATGCATTATTGACTTGTTCATTCATAATTAGTAATAAACATATTCCTATACCTGA
>XM_036949991.1
AATTGTACTCCAGtgtagtaggtggcggtaatacaacatttattggatgccaactgcGCTTAAACCTCGAAGAAGAATTCATTTCCTCCACATTCTTTCTGGATCATGATGGCTGCCGCCTTGAGAGGAAGCGTTGTAACATTGGCCAAGGGCCTTACTGGCATTGGTCCGCGGTGGCAGCAGCTGGCTGCCCGGTCCCTCAATATGACCGCCAGTCTGGGTGGGCCTGAGGCACCCCCGGCCCGTGCCGACGCCACATTCAAAGTCACCATGGTGCCCGGGGACGGAGTAGGACCTGAACTGATGACTGCTGTCAAGGAGGTGTTCAAGgcggGTGACGTCCCAGTGGAGTTTGAGGAGTTCCACCTAAGTGAGGTGCAGCACATGGACAGCGACGAGAAGCTGGAGCAGGTGTTGGCCTCCATGAAGACCAACAGGGTGGCAATGAAAGGAAAGATTAACACCCCCATGGAGTTCAAAGGGGAGCTGGCTGGCTTCGAGATGAAGATTAGGCGTAGGCTGGACCTGTTTGCAAACGTGGTACACGTGAACAGCCTGCCCGGCTACAGCACCCGCCACAACAACCTGGACCTGGTCATCATCCGAGAGCAGACTGAGGGAGAGTATAGCTCTCTGGAGCACGAGAGCGTGCCTGGAGTGATTGAATGTCTGAAGATCATCACTAGGGAGAAGTCTCGGCGCATCGCCAAGTTTGCCTTCGACTACGCCACCAAGAAGGGTCGCAGCAAGGTCACGGCGGTCCACAAGGCCAACATCATGAAGCTTGCAGATGGCCTGTTCCTACAGTGCTGTGCTGAGGTGGCAGAGCTGTATCCCAAGATCAAATATGAGAACATCATCATAGACAACTGTTGCATGCAGCTGGTCCAGAACCCATACCAGTTTGACGTGCTGGTGATGCCCAACCTTTATGGCAACATCATTGACAACCTGGCCGCTGGGCTGGTCGGTGGGGCAGGAGTGGTGCCAGGAGAGAGCTACAGCGCCGAGTACGCCGTGTTTGAGACCGGAGCTCGGCACCCCTTTGCCCAGGCTGTAGGCAGGAACATCGCCAACCCCACGGCCATGCTGCTCAGTGCTGCCAACATGCTCCATCACCTCAATCTGGAATACCACTCCAATATGGTGTCAGATGCTGTCAGGAAGGTCATCAAACAGGGCaaggtgCGGACGCGAGACCTGGGCGGTTACAGCACGACCGGGGACTTTGTGCAAGCCGTTGTGGGGAACCTCCGCCACCGACCCATGTGCTAAAGAAGTCCCGATCCCCTGAACGCCCTGCCCTTTTCTGTGCGCACAGGAGACCTGGGGGGCTATGCCACAAGCGACGAGTTCACCAGAGCTGTCATCGCCAACCTAGCCATCTGAGCTAGCCTCTCAAACACACATTCTTTATTTTACTCCCTTCAAACTAGTCTCTCTGCATTGACCACTCAAACAGCTGCGCACCAGATTAAATCCTGACCCATGCTCAACAACAGCTAACACCCATAGACTGAAATGCATACAAACCTCAAAATATGTAAAAATACACACAATGAAATTGAGGACCGGTTACATAAATGAGAAGACAATATGGGGACGACACCTACAGTCTTGTGAACGgtaccaaaataaatgttttcccattcAACAATAGTTGTATGGAACTTGTAAGTCACATTCCACATTCTCTACCAGAGTGGTGTTCTTCAATGAATGGGTCTTGTTTAGATATTCATACAAGATACATGTACTATATCagtatattttatttattcacTACAAGTGTTATATGCATTATTGACTTGTTCATTCATAATTAGTAATAAACATATTCCTATACCTGA

Function

NR:

description
isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1

GO: NA

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568639.2 False 3126 mRNA 0.48 11 47728424 47742589
XM_021568640.2 False 1724 mRNA 0.50 11 47728424 47743582
XM_036949991.1 True 1850 mRNA 0.51 12 47728424 47743582

Neighbor

gene id symbol gene type direction distance location
LOC110493989 LOC106565315 coding upstream 351724 47374636 ~ 47376700 (+)
otop1 LOC106565199 coding upstream 355843 47365071 ~ 47372581 (+)
LOC110493987 LOC106565200 coding upstream 366638 47352232 ~ 47361786 (+)
lyar lyar coding upstream 387193 47328302 ~ 47341231 (+)
LOC110493983 LOC106565202 coding upstream 420235 47286927 ~ 47308189 (+)
LOC110493993 LOC106565195 coding downstream 774 47744356 ~ 47790013 (+)
LOC100135862 LOC106565314 coding downstream 61930 47805358 ~ 47807518 (+)
LOC100136222 LOC100136222 coding downstream 71309 47814891 ~ 47818587 (+)
LOC118940470 NA coding downstream 85133 47828715 ~ 47833280 (+)
LOC110493995 LOC106565194 coding downstream 195364 47938946 ~ 47971144 (+)
G1456920 NA non-coding upstream 389 47727795 ~ 47728035 (+)
G1456883 LOC106565198 non-coding upstream 13677 47713943 ~ 47714747 (+)
G1456888 NA non-coding upstream 18658 47707696 ~ 47709766 (+)
G1456889 NA non-coding upstream 22499 47704632 ~ 47705925 (+)
G1456916 NA non-coding upstream 26850 47701339 ~ 47701574 (+)
G1457051 NA non-coding downstream 233352 47976934 ~ 47977139 (+)
G1457091 NA non-coding downstream 332784 48076366 ~ 48076682 (+)
G1457093 NA non-coding downstream 344023 48087605 ~ 48087822 (+)
G1457137 NA non-coding downstream 456459 48200041 ~ 48200356 (+)
G1457153 NA non-coding downstream 522382 48265964 ~ 48266185 (+)
G1456570 NA other upstream 499628 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1869923 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2391901 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2468853 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2657499 45069971 ~ 45070925 (+)
G1456969 NA other downstream 89998 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 287332 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 645500 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 949739 48693321 ~ 48814670 (+)

Expression


Co-expression Network