RNA id: XM_021568639.2


Basic Information

Item Value
RNA id XM_021568639.2
length 3126
RNA type mRNA
GC content 0.48
exon number 11
gene id idh3b
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47728424 ~ 47743582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGTACTCCAGtgtagtaggtggcggtaatacaacatttattggatgccaactgcGCTTAAACCTCGAAGAAGAATTCATTTCCTCCACATTCTTTCTGGATCATGATGGCTGCCGCCTTGAGAGGAAGCGTTGTAACATTGGCCAAGGGCCTTACTGGCATTGGTCCGCGGTGGCAGCAGCTGGCTGCCCGGTCCCTCAATATGACCGCCAGTCTGGGTGGGCCTGAGGCACCCCCGGCCCGTGCCGACGCCACATTCAAAGTCACCATGGTGCCCGGGGACGGAGTAGGACCTGAACTGATGACTGCTGTCAAGGAGGTGTTCAAGgcggGTGACGTCCCAGTGGAGTTTGAGGAGTTCCACCTAAGTGAGGTGCAGCACATGGACAGCGACGAGAAGCTGGAGCAGGTGTTGGCCTCCATGAAGACCAACAGGGTGGCAATGAAAGGAAAGATTAACACCCCCATGGAGTTCAAAGGGGAGCTGGCTGGCTTCGAGATGAAGATTAGGCGTAGGCTGGACCTGTTTGCAAACGTGGTACACGTGAACAGCCTGCCCGGCTACAGCACCCGCCACAACAACCTGGACCTGGTCATCATCCGAGAGCAGACTGAGGGAGAGTATAGCTCTCTGGAGCACGAGAGCGTGCCTGGAGTGATTGAATGTCTGAAGATCATCACTAGGGAGAAGTCTCGGCGCATCGCCAAGTTTGCCTTCGACTACGCCACCAAGAAGGGTCGCAGCAAGGTCACGGCGGTCCACAAGGCCAACATCATGAAGCTTGCAGATGGCCTGTTCCTACAGTGCTGTGCTGAGGTGGCAGAGCTGTATCCCAAGATCAAATATGAGAACATCATCATAGACAACTGTTGCATGCAGCTGGTCCAGAACCCATACCAGTTTGACGTGCTGGTGATGCCCAACCTTTATGGCAACATCATTGACAACCTGGCCGCTGGGCTGGTCGGTGGGGCAGGAGTGGTGCCAGGAGAGAGCTACAGCGCCGAGTACGCCGTGTTTGAGACCGGAGCTCGGCACCCCTTTGCCCAGGCTGTAGGCAGGAACATCGCCAACCCCACGGCCATGCTGCTCAGTGCTGCCAACATGCTCCATCACCTCAATCTGGAATACCACTCCAATATGGTGTCAGATGCTGTCAGGAAGGTCATCAAACAGGGCaaggtgCGGACGCGAGACCTGGGCGGTTACAGCACGACCGGGGACTTTGTGCAAGCCGTTGTGGGGAACCTCCGCCACCGACCCATGTGCTAAAGAAGTCCCGATCCCCTGAACGCCCTGCCCTTTTCTGTAAACTGGACGGCCAACCAAATATAATTTGGATATATTGAACCCAATATTGCCACATTCCCTAAACTTTACCCCACTAACTTTTTTGCTCACTTTCCCACTAAACTAACACTTACGTCACTCTTGGCAGCTCTCCCCTCCGCTTTCTTTTCATATTCCTCTTTACGCGCTCGGCGTATCCTCTATTTTGTTTTTCTCTCTTACTCAAATTCAAAAATTATTGGCCAAAGCAGATAATTATcgtcatttttttaaaatttatttttacCAAAATCGTCCATTTATGCTGTGGACTTCTATTTTCTCCCAGTCTTTTCCTTGTGGAACCCTTTCTCCAACTGAGCACCCCCTGCTTGGTGCCGTTTCTtgcttctctcttttcctccatgTCAGCCTGTTCTTTTGTACTGCCTCTGCTGTTGGCTGCACTCTTCTATAAGCTGTTCTAGAATCTTCTCTGTTTTTGTCGGCTCTACTAACTCCCTATAGTCTACTCTCCTATTTGTCAGCTAACTCTCTTTCCCTCCACTCcaactcttcctcttctctctctgagctgtttcATTGTCTCTGTGTGGACAAGCATATGATCTTATATTACATTGACCTCCACTAGTCCAGCCTCGCAGTCCATACCGGTCGGGGCCGTGTGTTATTCAGCAGTATTGGTCAAGCAGGTTTCGAGCCACGGGGACAATTCACCGACGCCAAAGCGAGTGAGAAATCTCTACCACAGCACTGTATCAATGGATATCTGGCCTGCCATTTCACAGTCCTGAGTCGTGCTAGGCATATACAGTACGTCGTTCATAGCCCTTTGACTCTATGTGCAGACTTTTCTTGGCTTGGAGTCCAGGCTACCGTGGTAGCATATGCGTAGACTACCGTAGCTGTAGACTTTCGGTCATTGCGCtgacgctagttagcattggctcttGAAACTACTCTAACTGCCTTCATTCTGTACGCAGAgacaaaaatggtatccatgagttcgtctgactctgggtaagtagaaaaacAGCTTAATTGCCAGAATCTTCCAGTATCCTTTTTAACTGGCCTTTTCAATCACAACCTTTAATTACGTGCACAGTCAGGTTAAGACTGTTTTAGTTgctgtaaaaaatgtttttttaaaactgCACTGGTTTCCACTGAGTCATCATAAACATGGAAGTTTCTCACGAACACATATCAGCACCACTGTCTTAAAGGAGGCAGGATGTAGAGGTCATTCCTGAGATGGGTGACATTTTTCAGAATCTACAATCAATGTTTTGATATTGTTGCGTTAGCAGGGATGCTAACACGTTAGCCAATTTCACCGTTTGGTATTTGTAGCTAGCTTCATAGAACCTTTTAATTATGAATTGTCGCTCATCTGCATACTCTAGTCATCACTAGTGACTAAAAATAAATCTTAATAATTTGTTCACTGTGTATGCTGTAAAACGCACATAATGTGTATCGTAGAGGTCAATATCTAGGTAGCTTTTTGCTGGAGTTGTGACCTTGGAGATCCATCGTGTTTGGCTGTTCAGTCAGGCAAAGCTCTTTCATCATTAAATTTGCAAACGAACAAGCCACTGTAACTCGAGCCTACGACCAGCCTTGCCTGAGTTCACTTTGGCTTTGGACTTTGTGCCAAAAGTCCATTAAATTATATATTGGTTATGTTGCTGATCTCAGTGGTAGCATTTCTATTAGAGACTTAGACTGGCATGTGTCAGTCAGTCATTGGGACTTCAAATGTATTGGCTTATGTCATATTATCATGGTCAAATACTGAAGAATAAAAGATGGGGAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666814 lncRNA upstream 389 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 13677 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 18658 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 22499 47704632 ~ 47705925 (+) True G1456889
TU1666810 lncRNA upstream 26850 47701339 ~ 47701574 (+) True G1456916
TU1666953 lncRNA downstream 234345 47976934 ~ 47977139 (+) True G1457051
TU1666995 lncRNA downstream 333777 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 345016 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 457452 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 523375 48265964 ~ 48266185 (+) True G1457153
XM_021568635.2 mRNA upstream 351724 47374636 ~ 47376700 (+) True LOC110493989
XM_021568634.2 mRNA upstream 355843 47365071 ~ 47372581 (+) False otop1
XM_021568632.2 mRNA upstream 366638 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA upstream 366638 47352247 ~ 47361786 (+) True LOC110493987
XM_021568629.2 mRNA upstream 387193 47328302 ~ 47341231 (+) True lyar
XM_021568643.2 mRNA downstream 1767 47744356 ~ 47790013 (+) False LOC110493993
XM_021568644.2 mRNA downstream 1769 47744358 ~ 47790013 (+) False LOC110493993
XM_021568641.2 mRNA downstream 1771 47744360 ~ 47790013 (+) False LOC110493993
XM_021568645.2 mRNA downstream 1771 47744360 ~ 47790013 (+) False LOC110493993
XM_021568642.2 mRNA downstream 18009 47760598 ~ 47790013 (+) False LOC110493993
TU1666430 other upstream 499628 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1869923 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2391901 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2468853 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2657499 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 62769 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 90991 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 288325 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 646493 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 950732 48693321 ~ 48721244 (+) False bsnb

Expression Profile