G1458237


Basic Information

Item Value
gene id G1458237
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49068027 ~ 49083653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1668324
ttgggcgtgcaaaattattcagcccctttactttcagtgcagcctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaagccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgttagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcagttccgagatactgttgtgaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatagtgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagtctctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaaaatatccataaaaagtgtcatttaaagtttgccacaagccacctgggagatacaccaaagatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatgaccctgaac

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1668324 True 722 lncRNA 0.44 2 49068027 49083653

Neighbor

gene id symbol gene type direction distance location
LOC118940474 NA coding upstream 32103 49033962 ~ 49035924 (+)
LOC118940102 NA coding upstream 87460 48977636 ~ 48980567 (+)
erc2 LOC106583361 coding upstream 130006 48866589 ~ 49040356 (+)
bsnb LOC106565168 coding upstream 254804 48693321 ~ 48814670 (+)
bap1 LOC106565169 coding upstream 377930 48677007 ~ 48690097 (+)
LOC110494034 LOC106565158 coding downstream 225499 49309152 ~ 49319617 (+)
cacna1da LOC106583449 coding downstream 395263 49478916 ~ 49594500 (+)
LOC110494954 LOC106565153 coding downstream 521010 49604663 ~ 49657967 (+)
LOC110494957 qrich1 coding downstream 1097392 50181045 ~ 50192699 (+)
LOC110494976 LOC106565138 coding downstream 1113450 50197103 ~ 50207320 (+)
G1458226 NA non-coding upstream 47347 49019387 ~ 49020680 (+)
LOC110494028 LOC106565296 non-coding upstream 56056 48977901 ~ 49120417 (+)
G1458133 NA non-coding upstream 64450 48973205 ~ 49003577 (+)
G1458176 NA non-coding upstream 117731 48945485 ~ 48950296 (+)
G1458140 NA non-coding upstream 219792 48848028 ~ 48848235 (+)
G1458264 NA non-coding downstream 58417 49142070 ~ 49142648 (+)
G1458265 NA non-coding downstream 62854 49146507 ~ 49168867 (+)
G1458293 NA non-coding downstream 98249 49181902 ~ 49183741 (+)
G1458294 LOC106565161 non-coding downstream 101037 49184690 ~ 49220831 (+)
G1458301 NA non-coding downstream 126297 49209950 ~ 49269648 (+)
LOC110494013 LOC106565177 other upstream 643622 48389082 ~ 48424478 (+)
glrx LOC106565191 other upstream 1031444 48030892 ~ 48036585 (+)
G1456969 NA other upstream 1228657 47833580 ~ 47839370 (+)
G1458807 NA other downstream 355353 49439006 ~ 49439329 (+)
atxn7l2a LOC106565127 other downstream 1347154 50427145 ~ 50437612 (+)
G1459769 NA other downstream 1692876 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 1811287 50894903 ~ 50897444 (+)

Expression


Co-expression Network