G1464641 (LOC106565501)


Basic Information

Item Value
gene id G1464641
gene name LOC106565501
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54633094 ~ 54633537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1675373
CATTTATTACAAAAAAATCATGACAAAATGAATGTACAAATAAAAAATGCTGCCCTTGGTTGTATGAATGCATCTCAGTTGGGTACAGTCGTCCTGAGGATTTTTATGTCATCGGCAGGTCGGTCTTGTGTGTTTGTTTCCACCATGCCGACGCGGTTGACCACTGCCATACCTTGGCATACCCTCCCAAAGATACTGTGCTTCCCATCCAACCACTGAGTAGGCCCCAGGGTCAGGAAGAACTGGCTTCCGTTTGTATCTGGTCCTGCATTGGCCATCGCTAGGATCCCTGCACCTAGGGAGAGAGCACTGTGAATTTCAGGTCAGGGTGAAGTTCATCTTCAAACTCTT

Function

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1675373 True 351 lncRNA 0.47 2 54633094 54633537

Neighbor

gene id symbol gene type direction distance location
slc6a11a LOC106565359 coding upstream 10418 54592555 ~ 54622676 (+)
frs3 LOC106565358 coding upstream 132768 54487060 ~ 54500326 (+)
LOC110494110 LOC106565356 coding upstream 159208 54471705 ~ 54474472 (+)
sirt4 sirt4 coding upstream 171772 54453353 ~ 54461322 (+)
zgc:172271 LOC106565354 coding upstream 179341 54434361 ~ 54453753 (+)
eno1b LOC106565361 coding downstream 19895 54653432 ~ 54662827 (+)
rereb NA coding downstream 29592 54663129 ~ 54677374 (+)
iho1 ccdc36 coding downstream 79974 54713511 ~ 54717607 (+)
slc26a6l LOC106565505 coding downstream 99526 54733063 ~ 54742363 (+)
LOC110494114 LOC106565368 coding downstream 159406 54792943 ~ 54805426 (+)
G1464616 NA non-coding upstream 5679 54624324 ~ 54627415 (+)
G1464615 NA non-coding upstream 8886 54622806 ~ 54624208 (+)
G1464609 NA non-coding upstream 67046 54565785 ~ 54566048 (+)
G1464283 NA non-coding upstream 195156 54437651 ~ 54437938 (+)
G1464659 rnf223 non-coding downstream 57641 54691178 ~ 54694992 (+)
G1464668 NA non-coding downstream 73433 54706970 ~ 54707336 (+)
G1465118 NA non-coding downstream 355502 54989039 ~ 54989364 (+)
G1465120 LOC100136012 non-coding downstream 356388 54989925 ~ 54990146 (+)
G1465162 NA non-coding downstream 383300 55016837 ~ 55017440 (+)
LOC110494100 LOC106565348 other upstream 368478 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 443477 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3542205 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3735650 50894903 ~ 50897444 (+)
G1466124 NA other downstream 1363111 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1382040 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1454641 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1585705 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 1946854 56575737 ~ 56584088 (+)

Expression


Co-expression Network