XLOC_003421 (MDFI)


Basic Information

Item Value
gene id XLOC_003421
gene name MDFI
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22109887 ~ 22169026 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006689
GGGCAGGCTCGATCTGactgactgagtgagtgagtgagtgcgcgctgctgctgctgcacaaGAAAACACTGACGAGCGACTCAACAACTTTATCATAACTGGAAATTAACTAAATCTGAGAGGAAAACCTTTTATAACTGTTTACATCTCATGTTTCTTGTCTCCCACTCGCGTAGTGAGAAACGGCACACTGTTTTATCCACTTTACGATGTTTTCTGTCAAGTTTTTCTGACTTTGGGAGAGCTTGAAGACGAAGATAAATATCTTGATTTATACAACGCTTGATATCACAAAGCAAGCAAACAAAAGAGGAACAACGAGTGTCAACGTTGATGTAAATAAAGAAAGTTTAATagttgaagagagagagagagatacatgAAGAGAAAGAAAGGACTTTTCCCCCGCTGAACGGGACACTTGAAAGTTTGTTTTGCGCGAGCATTAAAAGATGCATCACTGAAACAACACTGGTTCCGAGCGACCATTGCAGggTAATTTCTAGTCACCTGGCATCTGGGTCCAGAACAGATGTCCAAAGAGGACCACAGCCATAGTGCCAGCCCACCCGAACCTCCAGATGGAGCCCAACCGGAGAGACTGTCGGATGAAACTGTCTCAAACCCAGAAGGGAATGAAACCGGTGAGCAGACAGCACAGAACTCAAACACCCCACCCATGGAAAAGACAGGAGACGTGGAGaatggcaacaacaacaacagcctgTCCCAACCGGACCTCACCAGCACTCCTGGCAAAAGCATAACATATCAACCTCAGGCACGCTCTACACCCATAAACCCCACGCTAACCAGCTCCACTGAATCAGCCACGCTGCTGAGGAGAGACAGCAAGCCACACAGCAATGGGGTGAGAAACGGCACCTTCTCACGAGCtgcctcttcatcatcctcatcttcatccaCAGCCCATAAAAACCCTAAGAAGTTACAGTCGAACCCATCCATCAACAGTCAGAGGAGCAAAGGAAGCTCCAAATCCAACAGCTCCAAGATCCCCACAGAGGCCCAGGATGATTGCTGTGTCCACTGCATCCTGGCCTGCCTGTTCTGCGAGTTCCTCACACTGTGCAACATCGTGCTGGACTGCGCCACGTGTGGCTCCTGCGCATCAGACGACTCCTGCTTCTGCTGCTGCTGTGCTTCAGAGGAATGCGGCGACTGTGACCTGCCCTGTGACATGGACTGCGGAATCATCGACGCCTGCTGCGAGTCTGCAGACTGTCTGGAGATCTGCATGGAGTGCTGCGGCCTTTGTTTCTCCTCCTGAGACTGATCTGAGACCTGAGGAGAAACGAGCAGACAATGACAGACGCAAACCTAGCTGTGAGTTACAGTCAGGTAGCTTTCTTATGAGGTTAGTGGTCCAACACTAGTGGTGTTATTCTGAAATAGTCGTATACATGCTTATGAATTTCTTCTGGAATGGTTTCTGCTTTAATGTGCTTTGTTGAGTCTACATTGGCGTGACGCTGAATACAAACACATCGACTGAGGAAAAACTAAAATCATCTAAGCGCCAAGCTTTTGATAAAAGCACAATCGACAGGCACCCAGTGGTTTACAAATTCCACAATAATGCACGCCGGAAAAGAGCTTGAACAATGCAGTATCATTAAAAAGCCTCTCAAGGAAGACTAATCCAAAGATCACATACACAGTCAACACTATTTTGTAATGTTAATCCCAAATATCACCTCTCAGTACGCACACTTACTGTAGTACACTGGTGTAGTCCTTTGAGGATTACAAAAGCCATAAACTGTGAGTGTGAAACTCATAGATGTATGCGAGCGGGAGAACGACGTGTGTATTTAATATATGGTGCCATGCTACAGTTGTATTTTAGATTGTATATAAACGTGAAGAGAATCCTGTCCGTCTCCACATTTGCTCTTGTGATGTTCGTATTCTTATTTTTCTGTCGTTTTTCACTTCATTAAGCAGTCTTACTCGTACTGGAATCATACTGTAAACGGTTGTGAATTGCTcccatattttttccccaatgtgAAATGTCTGCCTTGTAATTCCAAAACTTTCCATttaaagaagtgtgtgtgtgaatctaaaTGTTTGATTATCTATCTACCTATTGTTTATGTAGTAAATGCCTAgcattagcagtattattttatCCTTTGCAAAAAAAAGTCAGGTTTCTTTACAGCCAGGTTCAGACTACATGATGATATTTTAATCCACGACCCATTTGATGTTGGTGAATTCTTGCTAAAGCATAAACAACAATAAGCACATATTTGATCTTGTCTCTGGGGTCAGTTCTTATGCTAATTACTCTGTTAGCTGCATTTGATTATTGATGCAAAATTCAAACCTGCTTGGGAGCTGCTTATTTTATATCAACAGCATTAGATTGTCATTTCAAGCTGGTGATACTTGATGTAGCAGtggctgatttttaaaaatattttatatatatata
>TCONS_00006690
GTAGTCTCTCATTGTACAGCTACTCAGCCATGTTGATTCATGGTAaggtaacttaaaaaaattaaatcaattttgTCAAAAATTGTCAAAAGTCAATTTTGTCAACAAACAAGAGAGAAACTAATTGTTTAAGAAATCCTTTAACGTAAACACACAGAGTAAAAAATGGAGTCTGCCAATATCCAGTGAAGCAAAAGAAGGCAGAAAGACAGAGAGTCACTAAAGGAAATAAACAGAGCAATGGACTGATGTTCCGCAGGAGATGCAGTGTGTTTATCAGACAGCCAGTAAAGCCCAGCTGGCTTCCATTTGGGTAGGTATGGGCCAGAGGCCAAGACGAAGCAGAGCTCAGTTGCACTCAGCTCAGCTAAACACAGATCTTCTACTTGCTAAGACCCAGTCCTGACCTTCTTTGATGTCACGCTGCTCTGGCCTGCTCAGACAGCCCTGTATAATTACCAGGCCACATAATAAGACCACTTGGCTCCAGCGCTGACTTATAAAAcacgcacatacaaacacatgctGCTGACCGCATGAATGCACTTTTACAGATACGTGAGAACAGCACCCAAACTAGTGCGCATGCAAAGTGATGATCTAGCAAAATAGCTGGtgcaaatataaacacatttctaaaccgaGCGTCCACATTGTACTGCTGTTGAATCAAGGCGCTTTAGAAATGCTATGAAAGCAGAGCTTTGTATAATCTTTGTGTAACTtgtattttctttctctctcctgcgtgtttgtgttttttggcCTCAGAAGGGAATGAAACCGGTGAGCAGACAGCACAGAACTCAAACACCCCACCCATGGAAAAGACAGGAGACGTGGAGaatggcaacaacaacaacagcctgTCCCAACCGGACCTCACCAGCACTCCTGGCAAAAGCATAACATATCAACCTCAGGCACGCTCTACACCCATAAACCCCACGCTAACCAGCTCCACTGAATCAGCCACGCTGCTGAGGAGAGACAGCAAGCCACACAGCAATGGGGTGAGAAACGGCACCTTCTCACGAGCtgcctcttcatcatcctcatcttcatccaCAGCCCATAAAAACCCTAAGAAGTTACAGTCGAACCCATCCATCAACAGTCAGAGGAGCAAAGGAAGCTCCAAATCCAACAGCTCCAAGATCCCCACAGAGGCCCAGGATGATTGCTGTGTCCACTGCATCCTGGCCTGCCTGTTCTGCGAGTTCCTCACACTGTGCAACATCGTGCTGGACTGCGCCACGTGTGGCTCCTGCGCATCAGACGACTCCTGCTTCTGCTGCTGCTGTGCTTCAGAGGAATGCGGCGACTGTGACCTGCCCTGTGACATGGACTGCGGAATCATCGACGCCTGCTGCGAGTCTGCAGACTGTCTGGAGATCTGCATGGAGTGCTGCGGCCTTTGTTTCTCCTCCTGAGACTGATCTGAGACCTGAGGAGAAACGAGCAGACAATGACAGACGCAAACCTAGCTGTGAGTTACAGTCAGGTAGCTTTCTTATGAGGTTAGTGGTCCAACACTAGTGGTGTTATTCTGAAATAGTCGTATACATGCTTATGAATTTCTTCTGGAATGGTTTCTGCTTTAATGTGCTTTGTTGAGTCTACATTGGCGTGACGCTGAATACAAACACATCGACTGAGGAAAAACTAAAATCATCTAAGCGCCAAGCTTTTGATAAAAGCACAATCGACAGGCACCCAGTGGTTTACAAATTCCACAATAATGCACGCCGGAAAAGAGCTTGAACAATGCAGTATCATTAAAAAGCCTCTCAAGGAAGACTAATCCAAAGATCACATACACAGTCAACACTATTTTGTAATGTTAATCCCAAATATCACCTCTCAGTACGCACACTTACTGTAGTACACTGGTGTAGTCCTTTGAGGATTACAAAAGCCATAAACTGTGAGTGTGAAACTCATAGATGTATGCGAGCGGGAGAACGACGTGTGTATTTAATATATGGTGCCATGCTACAGTTGTATTTTAGATTGTATATAAACGTGAAGAGAATCCTGTCCGTCTCCACATTTGCTCTTGTGATGTTCGTATTCTTATTTTTCTGTCGTTTTTCACTTCATTAAGCAGTCTTACTCGTACTGGAATCATACTGTAAACGGTTGTGAATTGCTcccatattttttccccaatgtgAAATGTCTGCCTTGTAATTCCAAAACTTTCCATttaaagaagtgtgtgtgtgaatctaaaTGTTTGATTATCTATCTACCTATTGTTTATGTAGTAAATGCCTAgcattagcagtattattttatCCTTTGCAAAAAAAAGTCAGGTTTCTTTACAGCCAGGTTCAGACTACATGATGATATTTTAATCCACGACCCATTTGATGTTGGTGAATTCTTGCTAAAGCATAAACAACAATAAGCACATATTTGATCTTGTCTCTGGGGTCAGTTCTTATGCTAATTACTCTGTTAGCTGCATTTGATTATTGATGCAAAATTCAAACCTGCTTGGGAGCTGCTTATTTTATATCAACAGCATTAGATTGTCATTTCAAGCTGGTGATACTTGATGTAGCAGtggctgatttttaaaaatattttatatatatatatatatatatatttatatatatatatatatatatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaattttttttttttaatacaagtgTACTGTTGACTAATGTGCTCtacttttaaaatactaatatggaccttttaggctGCATGGTTTAAGTGACTCAATTCTGGGGTTTTTTTCCTCCCATGTGGCATAGATATGGCTCGTGTACatacgtgtaagcaggaaaaaatgacatggattctgatttactcaaGTTAGATTCAGGTCTAGTTCATATGTGAAAGtctatccgatatgaatcggatctgtgccaTTATGTCTGctgtgtaagcaggtagatcagattttcCCCAACATGACAAGACAACATGACAACAAAAGTCATCATTAAAAATCATTGTGAATGACATCAACTCTGATGCTGTAATTTCATAACCGACTTCAgcagtcccaaaccttaaatctcatatattagggcaaaaaaagcttttatattgacATATAGCACaattatttaagcatgttaataaGAGAGAGTAAGCGCAACatccgccacgtaaccaatataaactaatataaaactgtgGCATAAGTATAAATCgtgccatggacattacattaagatgcatactgttttaaaaaggcctacattaaaagaagatggccaaatgagaactttcTGTCATAAACTGTAGCAAAACTacttgtcaaaaataaataaataaacaaaataaaccctGTGAACACATTAAATACAGGAATGAAGAAAAGtgcgctcttttattatcagctgtcagtcagcgcccgctttttttttttctggtcattGAGTCTTTGccatgtgcagtgtaaatgccgACAATCAGTTAAGagtcatttttaaaaagatgatgtaagcaagTCAGCAAAAATattggatacagtcacaaaattggaattgaccatcaagatctgcggtGTAAATGCAGACTTATATACAAATGTGTACTTTGAAAAGCTATCGCCTCAGCTTAGTACAGTTTcgaatagtttattaatagacATGGCCAATATTCTCATTGATAGTGtattttttttgtgaaggaataattttataatttatgtaGGTCATGTAAATGCAATATTGACTGCTAATATGCGAGTGCGAGTGATCAAAATGCTTTATGAATGCAAAATGTCTTTTTATGGGttatgacatttaaatgcttgaaTATTGTCATTGAAAATCCATTGTAAAGAgttaaataaattgctaaatgctATATTTTTAACACACGCTAGGTTATTTCCAgcacaacaaatgtgaaaagtTACAATTTCAAATTTTGCTAATATGGCTGATAATTGGGAATTTTAGTCTTACCATCAGCCAATCGCTGCTTTGCCAATCATGATTGTgaggatcaatagatctgtccttcacagcaaacacaagcacacaaagcAAATATCAGATCAATTCATGcagatattttaatctgattctcaaatttgtttgaagaaccaaattagccaaatatcagttattaagattaaaagatccagaatcTGCCAACTTAAATTAGGTTGTTTAAGCATGGTTCTGACCCCTATGACTGTGCCATAGTGGATGACAATCAACCCCATGTCTTGGATGCTTCACAgcagcattattttatttattttttgacgctGACCAATAGGAGCTCTTAAGTACTGTATGGAGCTTTTAGATTTGGTGAAACAAGAGAGACGATATTGTCATAACGTAAATTGTCtggctttcttctttttttcctgaCAGAAAAGACAGCCAGTATGAAACTCGCCACTTTGTTAGCCATTGTTTGTTTATACTTATTTCCCGTACATGCTTCCTAATGACAACATGCAATGACTGGTTAGGAAGTGATGCGTAGTCTGACTACAACATCAATTTAGAAGTAAAAATGTCTTATGAGTGAATATTGTACAAGTGTAGTCTGAACCAGGCTGAAAATCTAAATCACATATTACCCATACATATTCATCTCTCAGAAAGATGGTGAAAAGCAATGCTTTCATTTCAACTGTTTACATTTAAGGATGTTTCTATTCTAGCTTGCAATAAACTGGTggtaaactaaatatattttaactgGACATGTGTACAACAATGGAataaaaaaacaggagaaaagaAATCTGTCTGCGTCCTGTTTGGTGatgttgaataatttttttttcatcaaataactcacattttattatctatttgttttttgtttatgaaaCCTAGAAGCAGCAAATGCAGAATAGATTAGCATGGAAGCTCATAACCAGTTAGAAAATGGTACTTTAGTATACtttaaattattctgttcatgAAATAAGGATACTTGAGcaaaaaaaactgatatattgGTTGtttcatgctgtttttttttattatacataccTAAATCCCATCATCCACATTGCCGTCATCATAGCATTTGTTCTGCATAACCCTTATATTTTGGGTTTATTTTGTAATTAGCTGTGTGAAGCTGTGTGATAAAAACTGCTGTTTGGACAGGCATCGCCTCTAACCTCTTTTCTGTTGCCCAGGAAAGCTCTGCAAGGCTCGGGCAACAGAAAACACTGCGGTTTAATAGGCTCTTAAAGGGCTGCCAAAGTCGTTGAAGAGGAATGTCtgtttgaggcaacagtgcaatgTGTGATAAGACCTTCTCAGTTACATCTCCTGCTCACTATGCATTtcaccttctctctctctctctctcgctctcttcctgtttttctctttctttcaagtCTATAAATATGGTTCTAGCTGGCTGTGGGTGGTGGATTCTATCCCTGGTCAAGTCTCAACCACACAGGTCTATAGATAGGTAGATGACAGTTTTAACCTGGTGGTCAGAGGCACTCTGGTCTCGAAATGTTAGCAAGAAACAGAGGCAGCATTGAAGCCAGGCAAGAGGCTAAAGTCTTCCTGAATCTCAAAAATTTAAAGAATGACAATTATTGTTTATCATTATCATGTATTCTTCCTTGGTTGTTTTaaacttttgagtttcttttgttgaacacaaaataaatattttgaaaaaggctGCATACTGGCATTCATCGACTTccttagtaggaaaaaacaaatactatggaagtcaatag

Function

symbol description
mdfi Is expressed in several structures, including neural plate; paraxial mesoderm; pectoral fin; pectoral fin bud; and presumptive diencephalon. Orthologous to human MDFI (MyoD family inhibitor).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-84 Is expressed in several structures, including neural plate; paraxial mesoderm; pectoral fin; pectoral fin bud; and presumptive diencephalon. Orthologous to human MDFI (MyoD family inhibitor).

Ensembl:

ensembl_id ENSDARG00000089564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006689 False 2467 mRNA 0.44 5 22109887 22165841
TCONS_00006690 True 5794 mRNA 0.38 3 22134540 22169026

Neighbor

gene id symbol gene type direction distance location
XLOC_003420 foxp4 coding upstream 15495 21910343 ~ 22094392 (+)
XLOC_003419 NA coding upstream 206193 21902677 ~ 21903694 (+)
XLOC_003417 NA coding upstream 350862 21612671 ~ 21759025 (+)
XLOC_003418 CR812468.2 coding upstream 459249 21650522 ~ 21650638 (+)
XLOC_003416 FAM72B coding upstream 511360 21586335 ~ 21598527 (+)
XLOC_003422 ppfia4 coding downstream 205393 22374419 ~ 22584452 (+)
XLOC_003423 BX537143.1 coding downstream 427700 22596726 ~ 22599593 (+)
XLOC_003424 si:ch211-86h15.1 coding downstream 454258 22623284 ~ 22630389 (+)
XLOC_003425 CU861893.1 coding downstream 544989 22714015 ~ 22714131 (+)
XLOC_003426 NA coding downstream 751443 22920469 ~ 22927188 (+)
XLOC_003369 CR854846.2 misc upstream 5986805 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 9397891 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 9415624 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 9424288 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 9429859 12679732 ~ 12680028 (+)
XLOC_003415 NA non-coding upstream 701053 21406687 ~ 21408834 (+)
XLOC_003414 NA non-coding upstream 803125 21302712 ~ 21306762 (+)
XLOC_003428 BX571675.1 non-coding downstream 1228244 23397270 ~ 23397385 (+)
XLOC_003430 NA non-coding downstream 1425323 23594349 ~ 23597671 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_02463470_02484038 MDFI coding CI01000058 null 2462305 ~ 2484038 (-)
bowfin (Amia calva) AMCG00013912 LOC106565692 coding CM030125.1 CM030125.1 46858640 ~ 46870713 (+)