AMCG00013912 (LOC106565692)


Basic Information

Item Value
gene id AMCG00013912
gene name LOC106565692
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46858640 ~ 46870713 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013912
ATGGTCGGAGAGAACCAGGAGTTTAAAGCCACAGAGCAGCCGGACGCTGAAACTGCAAACACAGACCCTGCTGGAGAACCCGGTGCGCCAGAGCACGGAAACAACAGCAGCCTTCTGCAGCGGCACGTCTCAGCGCCGGACAAGAGCGTCACATGCCAACCTCGAGCCAGGTCGCCAGCCTGTGATCCCACACTGGAGGGCCAGGGCACGGAGACGGCCTCCCTGCTGCACAACGGCGTCCAGCCCAAGCCCCCCCGTCAGCAGAACGGTGTGAAGAACGGCAGCACCAATGGGCGCCCGGCCGCGGGCTCGCTCTCGCAAGCCGCCTCCCAGAAGGCACACCGGAAGCTGCGGTCCAACCCATCCATCAACAGCCACAGCAGCAAGAGGAGCAAAGGCAGCTCCAAGTCGGCCGGCTCTCAGATCCCCATTGAAGCGCAGGATGACTGCTGTGTCCACTGCATCCTGGCCTGCCTGTTCTGCGAGTTCCTGACGCTGTGCAACATCGTGCTGGACTGCGCACTGTGCGGCTCCTGCGCCTCCGACGAGCCGtgcctgtgctgctgctgcgcCTCCGAGAACTGCGGCGACTGCGACCTGCCCTGCGACATGGACTGCGGCATCATCGACGCCTGCTGCGAGTCAGCCGACTGCCTGGAGATCTGCATGGAGTGCTGCGGCCTGTGCTTCTCCTCGTGA

Function

NR:

description
PREDICTED: myoD family inhibitor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013912 True 699 mRNA 0.64 4 46858640 46870713

Neighbor

gene id symbol gene type direction distance location
AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding upstream 21630 46796042 ~ 46837010 (+)
AMCG00013913 NA coding upstream 105983 46743981 ~ 46752657 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding upstream 300689 46553031 ~ 46557951 (+)
AMCG00013904 NA coding upstream 453955 46393809 ~ 46404685 (+)
AMCG00013902 NA coding upstream 587821 46259978 ~ 46270819 (+)
AMCG00013918 NA coding downstream 139579 47010292 ~ 47012262 (+)
AMCG00013923 NA coding downstream 155772 47026485 ~ 47026974 (+)
AMCG00013917 NA coding downstream 207147 47077860 ~ 47085038 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding downstream 252995 47123708 ~ 47132176 (+)
AMCG00013939 lrrn2,LOC108425772 coding downstream 670520 47541233 ~ 47543434 (+)
G47580 NA non-coding upstream 388169 46419132 ~ 46470471 (+)
G47546 NA non-coding upstream 555771 46296633 ~ 46302869 (+)
G47390 NA non-coding upstream 936742 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 952241 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 955455 45901867 ~ 45903185 (+)
G47669 NA non-coding downstream 59754 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 99025 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 104803 46975516 ~ 46976186 (+)
G47728 NA non-coding downstream 276642 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 361341 47232054 ~ 47248989 (+)
AMCG00013879 dennd2d other upstream 899446 45943571 ~ 45959194 (+)
G47398 NA other upstream 916734 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1035412 45816372 ~ 45823228 (+)
G47206 NA other upstream 1497758 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1762971 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 166382 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 349206 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 881501 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1368987 48239700 ~ 48258433 (+)
G48018 NA other downstream 1398041 48268754 ~ 48269272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003421 MDFI coding NC_007122.7 CM002895.2 22109887 ~ 22169026 (+)