AMCG00013911 (foxp4,LOC107675840,LOC107739274,LOC107548756)


Basic Information

Item Value
gene id AMCG00013911
gene name foxp4,LOC107675840,LOC107739274,LOC107548756
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46796042 ~ 46837010 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013911
ATGGATGTGATAcagcagcagctggggAACAAACAGCTGGCgtttcagcagcagctcctccagatgcagcagctccagcagcagcacctCCTGAACCTGCAGCGGCAGGGCCTGGTGAGCCTGCAGCCAGGCCAGGGGGCCGTGCCCATGCAGACGCTGCAGCAAGCCATGTGTCCCGCGGACCTGCAGCAGCTCTGGAAAGACGTGGCCAGCGTGCAGAACGCGGAGGACGCCATGAAACACGAAGGCCTCGACCTGACAACCAACAGCTCCAACACTACCTCGTACTCGGCCGCTAAGGTCTCACCTCAGATACCCCATCACTCTTTGCCAAACGGACAGAACTCTGTGCACActccaaagagagagagAGCAAGACTCTTTGACTGGATCTCCTCCTTCATGAAGGCCGAACCTGTGGATGATCACTACACCCCACACTTGAAAAGCGGTTACCTGCAAAACATCCACTCTTCCCACGAGGAGCACACGGGCACACACCCTCTGTACGGACACGGGGAGTGCAAGTGGCCCGGGTGCGAAGCGCTATGCGATGACATGGGCCAGTTTATAAAGCACCTCAACAGTGACCACGCCCTGGACGACCGCAGCACGGCCCAGTGCAGGGTGCAGATGCAGGTTGTTCAGCAGCTGGAGATTCAGTTGGCCAAGGAGAGCGAGCGTCTTCAGGCCATGATGACTCACTTGCATATGAGGCCGTCGGAGCCAAAGCCCTTCAACCAACCTCTCAACCTGGCCTCCGGCGCGACTCTGCTGAAGAGGGAGAGCGACACATTCCCGGAAGGCTTacctcacccccccacctcgGCCACGGCGCCCATCACCCCCCTGCGGCAGGGCCCCTCGGTCATCAGCTCCTCCAGCCTGCACGGCCTCGCACAGAACCACGAATTCTACAAAAACGCTGATGTCAGACCTCCCTTTACCTACGCCTCGCTCATACGACACGCAATATTGGAAGCCCCCGACAGACAATTAACCCTCAACGAAATCTACAACTGGTTTACGCGAATGTTCGCCTACTTCAGGAGAAACACAGCAACATGGAAGAATGCTGTGCGCCATAACCTGAGTCTGCACAAGTGCTTTGTGCGAGTAGAGAATGTGAAGGGAGCAGTGTGGACAGTGGACGAAGTTGAATACCAAAAGAGGAGACCACCAAAGATGACCGGAAGCCCCACTTTAGTCAAGAATATGATATCAGGACTTGGTTACGGATCGCTGAACGCCAGCTACCAGGCCGCCCTGGCCGAGAGCAGCCTGCCACTGCTCAACAGCCCCACCCTGGTGAACACTTCCACCGGAGCCAGTATGAACATGCTACACGTGGGCCACGATGACGTAAGCAGCACGGTGGAGCAGGTCAACAGCAACGGCAGCTGCAGCCCCGGCCTGTCCCCCCAGCAGTACGGGCACCAGGTCCACGTCAAAGAGGAGCCGGCCGAGATGGAGGAGGACAGCCGGCCCGTATCGCTCATGGCGTCGGTGCCACAGAACCTGGCGCTGCCCGGAGACGAGCGGGACCTGGAGGAGGACATCCCCGCCGAGGAGTTGGAGTAGAGGATGGGGACGACAAATGCCACACCTCTTTCTCACGAtgtaaagtaaaagaaaaaaaaaaaaaaaaagaaaaagaggagaaaagaaaaaaaaggaaaaatactaACAGGGTCAGGCCTCACTTCTGCTCACAAACTTCAGCCACAGTACCGACCGGGGCAATGTTGACTCACCAGGCAAGGCTCTCAGACTCTCCGGAAAAACTAaattaggttttcttttttttggtttgtttttttgtatttcttgatgttagttttcttttttactgcTCCCAAATTATGCTGATTTGGTGACCTTAGTTCAACACAGACCTGAAGCTCCCTTGTCAGAGACGAAGGCGGGATCCCTCTTCCACCCCCGGACCAACGTAGACGTACGGTGCGAACGGTCTGGTTCTCAGTGTTACGGCGTTAGTGGTCAGAGATTTTACcacacaaagtaaaatatatgtctgtgtgtgtgtggccgtATGTATTCACaaccacaaacacatacacatatatctATTTTTCTATGATTATCTCCTGGAGGTACCTTTCTTTccattgaactttttttttttttttccccgctTTCTTTTGTGGGGAGAAGCGATGGCAAACGCTCGACACATTACCTCAGAAATCGGttggaagagagaaaaaatactgATCAATTTTGGGAACGAAGTTACCCTATGAAGTGTTATATTCccagtgtttttcattttgatctgGGGGTGTTTCGAGGGAGAGCTGGGTCTGAAGATGACTGGGCGGAGGTGCCACCCTGCTCGAGTCCACGTACAGTTTGAACAAGCAGAACTGCCCATGAGATCTTCATTCAGCCCGATTTAAAaacgcaaacaaacaaaactgtaaggAGCAAGTCTGTCACGTATCGGTTTGGTTTTGGTCCTTTTTTCATGGTGGAGAACTTGGAGAAGGGAAATCTGAATGTTTCATTCCTGTTTAGGGACATGTTGTAATTAGAAAAAACGCTCGCTTGCTAATGCACAGCCCCTCTGTCGCGGCCGCGCCGGGCCGGGATTTCCGTTTCAGCCCGGAAGACGAGAGTCACGGCGCTCTTCAGTGAAGACGGAAGGCATCGGTCAAAGAAATCGAGGAAAGGACCATCAGCGTTCTTCTTCGTCTCGACAGCTGTACGGTTTCTCTAGGCTGCACGAACGAATGCCATCTGACAACCGGAACGGAGGGAACTGCCAATTGTGACATTTGAGCACTATACTGTGGGTGACtcttaaaatgttatgtgttagggttcttctttttcattttgtcttttgtttctttccaaggatcactttttttttttccaggatgGCATTTTACAGTTGCTACACTAGGTGTCTCCAGTaaacaatgattttttttatttttattttgggtattttttaagaaaactgcttttttttttttctgtgtgtccCCCGCCCCTTaaacccacgcacacacacatgcgctcacatacaaaacacacttTAGTTGGTTTCAGAAACATCCAGTCCATACGAATTTTCGTTTCCTTCCAGCTTGTGACGTGGATGGATTTAAAGTAGTTTCTCAAGAATAGCACTTAATGTCTATAGACTGGAAATCTCAACCCCAAACGCAATCTGTACACCGAAGGATGGATTCGTTACACTCCGCGAGGTTTATAGTTGCAGTAAAAGTAGTCTTGTAGTATGAAATCTGATTCTGTGTCTAGTCTCGTCGGTCCAGTGAAGAGAATTTCTGCACAGACATTAAGCAAAACATCCCTAGTTCAGACAGTTATCcatgtctgtttttcatttccttttcctctattatttgtttctattatttctattattactACCATCAGCTGCGATACAAAGCATTgctttaagaaatatatatactgtcaCACAATACCTCATTCCACTAAGATCCTACCTTGAACCGTATCAAGTGTGATTCGTAGGTGACTCTTAATGTGGGTAACCAACTTGGTGACTCTTTGCTCAGTATAAGTTTAAAGTTATATTCGTATATAAATTTATAAAGCTATTTTGCAGTTCACTATGTGAATTGGATTTTTTGGAACAGCGTGTTGAGATTTTAAACTTTTGTCCGTGAGCACAAAAGCAAACCTTTTTCTGCAGTGCCATACCAAAATTTAATGActttctattgtattttttgttaccCGTTTTATTTGCGTTACAGGTTACCAAAGAGACGTGTAGTAAACCAAAAACCCTTCAGTTTtaccttttgttttatattaacctTTTCCTCCAAAAGTACTGGCCAAAAGAATAccattctgtaatgtttttatgatgatgatgatgatgattactaatacttcttcttcttcttcttcttcttcgttaAATTTCATGACTTACAGTACAGAACATTCCAAACCAAAGTTAAAAgcaaaggacaaaaaaaaaattactaatAATGATTTGGTTTCTTAAAAGCTTTGAAAAGATCAGTTGTCTGGACAGAAGGATACATAATAGGTATGGTAAAAGGCTAAAAAAGAAACGACAGTATTAACAAACCTCTTACAGTTctttttgaataaaaaaagcacttaaataaagtttaaaaaagtaaactgTACCATTTTCACGCTCAGGCGAACAGTGTTTTAAACACAACCCTAGTAAAGCCTCACGTTGGaagattttaaaatcttttgtaCCCTTTTAAGGCACTTGAAAGCAACAGTACATGTACCTACGCATGGGAGAGTAGCCTCTCGGTATCCATTGTGATGTTTCAATGCCTCTCTCCAGTGGATACCTTTAAAACAGAGATACCAAATGAGCGAATAAACCTACAGACAAACAAGGAAGACACAAACAGACGTGCACGGTTCGTGGCGTCGCGCCCGTGCATTCACGTAATCCGACACCCAGCCCTGTACTACAGCTCCACATCTaccaaattcattttaatttaccaCCCTCTCTTGAAGCGGTTAGCCTATATGgcgtgtattttttttttcatttatgttttttgctgctgtctttttttcttttattaatgaaactgaaatttaaaaatgggaTCAGTAAGCAGTTTACCAGAcatgttgttttctctctctgtggtcTACATTAACACTAAGAAGAGCAAGGGAGTCATTCTTGCTTTTGATACTCGGATGGGACTTCTTGGGACTGTATGTTTTGGGtcgtctgtctctccctccctgaggTGGTCTATGAAGGGGCAGCAGATTTATAATGTAGCAAAACTGTTGTCATGTTTTCCTCATGTTCTCTTCGGAGCCGAGTGACAAGGATTGCCTCAGGCTCTTTGGATGGATAGTGATGCTGTAATTCTTCAGCTGTATTGGATTGGATTATTCAAACCAAGCTTCCCACAATTGATATCTTTTGAGACAATCTAATAGTAGTGAAGTTCCTTCTGTTCttttgcaacttttttttttggtccaaGTCAGGTTTGGGACCAATATGGGaatattgaaaataacacagaacttgtgtttttgtgtgtttttctatttaatttgtcTCAGAATAATCATAAGAGACAGCtctttattcaatttatttgtattgtttcattgCTTCTAaactctctcaaattcaaatctATAGTTTAGAGTATAAGCAGTGATcgatacacaaacatacatttgaCCGATTACCAATAGGCAGTGTAGTGGTATTACATTATAAGATCATGTAagatcacaaaaacaaaaatctttatTGTATAACTGCAGAGTAAATacgttttattttgtgtgtgcaagtcacaaattgtaaataaattcCAATAAAGAGCCGGTCGTACTTTTTGTAAAGGCCAAAACAGACACTGTCTGAGATAATCCACATTTAGAAAGAAAGtggataaaaagaaaagttgcAAACGCTGCTCAACTGGTTGTTTATACTGTTTAGCTTAAAACCAATGTTTTTCGTTTGTGTTGGAACACCAgtcatgggggtggggggggagatcACTGGCATTTTACACTCatatcaaatgtgtgtgtatatatacagtataaatacagAAAGGCCAGGGAATCATAATTGGATGGTATAGAAATCTATTTCCAAGAATCAAAAGCAATTTGAACCATCCCGCGCTTGATAGAGACAGAACTCGCTCCCTCTGCCCTTTAGATCCCACATCAATAAGTTATCACACTTTCATCgatttattttccctctcctgttattttaaagcagaagtTTGCAACAGACTATTGTGACCAACCTATACCAATTTATAAAATCGTTCACATGACTGCGTTTTCACCGTAAAACGAAATAATCCAAAAAtgaaaccagaaataaaaacactaccTCCTTGCCCATGTTTGTTTCAGAGCAAAATACAACAAGGTTTGAGTATCCCTTGAGTATGCCATGTGTAACCCACGAGTAACCCATGAGTATCCCATGtgacatctttttttattacaattactaccactactactacttcacatacaaaaaacactcaaaaaaaaaaacacaaaccaaaacacaatttCCTGTTGCAACTTAGAGAGACTAAAAAGGTATAATTTTCTGATGCAAACCCTAAGCCTCCCGTTGCATCTGGACTCCAAATGAGAATAACAGGCTTGAACAGAACAATACTGTACTACATGAAAAATGACTACCTCtccaaaaaaaaactgaataaaaagaCTGTTCTGCGAAGAGCAAAACAGAAGCGGTCAACATATTTAAAAGGTCTACACAGAATACATATTCACCTTCTTTAAGTGATCTATTAGCATATCCTCTATAAACACGTCCTTTATGTTGCAGCTTAATTGCGTCCTCTAATTACCGCAGCATAATGAAGACTGGCTCGCTTTAAGCCAATCAGAACGCATCTGAATGGCCAATTATCAAGTGGGCTCAATAGAGGCAATCACACCATTGTCTGGGAGACTGTTTGGCTGCACAAATTGTTCCCAACTGGTCGGGTTTTAAGATGGaggtgttttcttttcaactagctgtaatgataataatacaaactaaaGTTATGGCCCACTGGTAAACAATCCCACAAACGAAACCCATTGCTGGATTAGGACAACAGTCAGCTGATGAATCAAAGGTTGCGTTTCCTGCTTCACAGCTGTAGCGGCCAGCTTTGCCCTGCCTCTGCAGAGGAGGATGGATACGGGGTGATTAAATAGTAATGCTCGAGTGATTCCTCTCGGCTTCAACTTGGCTTTGTTTTTTAGTGGCGGTGAATTCAGTCGGAGAGACTTAAATGGGCTACAGGACTATAGTGAAGGATATTCTTCTGAGATCACTGAAAGATCTTGTTCTCCCGTTTGTCCGTGCAGATGTACAGTGGGGGTGGGATCTCTGAATAAGGCACAGGCTGTCCGCAtctttcattgtgtgtgtgggggtgtccctctttgtttttctctcctgtaCAACTTGGCATTGTATATTTACAACACAAATAAGATATCCAAAGACCACAACGGAACTTGTTATGCTACCGTGCTCATGACACGGGGGGGGACGGGGACAAAACCGCATCTTaaagagtgaaaataaatctagAAAATGGAACTGCTGCATTTACAAAATGAACTTCAATTGTGCTTTAAGGTACACCTGTAAACAAACTCGTTTTATAAGACGTAGATGAACTGACATCCTTTGATGGAATTAGAATTCATTACACTTAAATAAGTTACTTTACAAACTTCTTCTCgatgtgttattgtatattaagGCTTGGCTTGGCTCTCaagagcagttttttttttttttttctttcctccatttttttttcatgttttcctgttttaatttactgCACCAGTTTAGCTATTGTAAAGCTTTGAGCTCAGTTTTTCCTATACTGTATTGCTTATGCTaaagtgtatgtatttatcataATAAGTGCAGCAGATATAATGGttaaatagatttgttttttggtttgttttcggtttgtttttcatgaaacGTCTGggacgatttttttttttttatgtgtattatctttaaaaaaaaaataataataagttagaTAAGTGGTTTAGGTAACACacctgtttgtatatttatcttAGCTAGGTCTATTTTGATACTTTTTGTCTCCGTactgcatttatgcatttttaaggaaaaaaatcgaaaacaaaaaaaagtaaacaaacaaataaaagaaaaaaaatcattgtgtattgaTACCTCAGAAGGACTTTTCTCAAAGACAGGACCAAAACCTCAAAaagtaaactaaaaaaaaaaaaaaaaaaagtgaagaaaatg

Function

symbol description
foxp4 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human FOXP4 (forkhead box P4).

NR:

description
PREDICTED: forkhead box protein P4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09409 FOXP2_4; forkhead box protein P2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013911 True 7870 mRNA 0.42 14 46796042 46837010

Neighbor

gene id symbol gene type direction distance location
AMCG00013913 NA coding upstream 43385 46743981 ~ 46752657 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding upstream 238091 46553031 ~ 46557951 (+)
AMCG00013904 NA coding upstream 391357 46393809 ~ 46404685 (+)
AMCG00013902 NA coding upstream 525223 46259978 ~ 46270819 (+)
AMCG00013901 NA coding upstream 578831 46215736 ~ 46217211 (+)
AMCG00013912 LOC106565692 coding downstream 21630 46858640 ~ 46870713 (+)
AMCG00013918 NA coding downstream 173282 47010292 ~ 47012262 (+)
AMCG00013923 NA coding downstream 189475 47026485 ~ 47026974 (+)
AMCG00013917 NA coding downstream 240850 47077860 ~ 47085038 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding downstream 286698 47123708 ~ 47132176 (+)
G47580 NA non-coding upstream 325571 46419132 ~ 46470471 (+)
G47546 NA non-coding upstream 493173 46296633 ~ 46302869 (+)
G47390 NA non-coding upstream 874144 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 889643 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 892857 45901867 ~ 45903185 (+)
G47669 NA non-coding downstream 93457 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 132728 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 138506 46975516 ~ 46976186 (+)
G47728 NA non-coding downstream 310345 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 395044 47232054 ~ 47248989 (+)
AMCG00013879 dennd2d other upstream 836848 45943571 ~ 45959194 (+)
G47398 NA other upstream 854136 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 972814 45816372 ~ 45823228 (+)
G47206 NA other upstream 1435160 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1700373 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 200085 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 382909 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 915204 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1402690 48239700 ~ 48258433 (+)
G48018 NA other downstream 1431744 48268754 ~ 48269272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003420 foxp4 coding NC_007122.7 CM002895.2 21910343 ~ 22094392 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_02507677_02545533 FOXP4 coding CI01000058 null 2507594 ~ 2546413 (-)