XLOC_034618 (sstr1b)


Basic Information

Item Value
gene id XLOC_034618
gene name sstr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 18412621 ~ 18445751 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067402
agagagagagagagagcgaacgcaCATGAGCGCACAACCACTGGAATCAAGCAGAATATGAGAAGGAGACGGACAGAATCagatggagaaagagagagagagagaaaggacacAGAGGCTCGGACGGATGAAACAGATGCTCCAGCTTGATCTCTTCAGCATCATGAGGACAATACTGAACAACCTGCACACCAGACTGACATAGCAGCACATTCCTCCTCATTCACATCAAGCTGGACCAGTCTCATCATCTCCATCACCCAGGTCTTAGTAATACCTGGAGCAAAGGAACACCAGCAAGACAAAGAAAACTAAACGTGTTAGACCTCCAACACTCCATCTATCCTTTTGATGGTACGATAGAACTGTGGATGAACTAATCTTGATTCGACAATATGCTCTGGATCACATTCTCCACCATGAGGCTGTTCTTCACGCAGGAGCACAGGGAGAGTAACGCAGTAATACTTTGATTCACAGACTCAATTTGTTTTTAATGAGCTGGAATGCCTTTCCCCTGCCAAGATAAAGAAGTTGAATGATGCTCAGTGAGCCATGCCCTTCAACACCTGCACACTCTCATAGACCAGCACAGGTTTGCCTAGGAATCCAAGAGGAATGCTCATACTTAAAATTCTGCACATGCTACCATTTAGCCTtcagatttcattttttttcttctgcgtATTACTTCTGAAGCCAAATCTTGTTGAAGTTAAAATGAGATGAGATGTGTTTGAGGCTGTAGGGTTGGTCTCAAGGACCTGCTAAGTGGCGAAATATATTTAAGGAGGATGTCACAAGTCTTGGGTTGATCTGCAGACTGGTAAAACTGAGAACACCTACAGACAAAAACAAGACTTCAGGATGTCTGACTTCACGAAAGGTCATTGATTGTAAATTTGGAAATCATAAACCGAAAATcctaaaaaaattgcaaaatggCCGAACTTGCTGGATACAATGGCAACGAGAGCTTCATGCTTGCAACCGATCTGCCTTTCAACTCTACCGGTGACTACGAGTATTATGAATCTGAACCTGACGCCAGCAAAATCATCATCCCCTCCATCTATGCACTGGTTTGTTGCATCGGCGTCACAGGAAACGCAATGGTCATCTACGTCATCCTCAAATACGCCAAAATGAAGACGGCCACCAACATCTACATTCTTAATCTAGCCATAGCGGATGAACTCTTCATGCTGAGCGTCCCGTTCCTGGCAACTTCAGCCGCAGTGCACCACTGGCCGTTCGGTTCACTTATGTGTCGCTTGGTTCTCAGCGTGGACGGCATTAACATGTTCACCAGCATCTTCTGCCTGACCGTGTTGAGTGTGGATCGCTATATCGCTGTCGTGCACCCAATCAAAGCGGCTCGCTACCGACGCCCTACAGTTGCAAAAGTGGTCAACGTTTGCGTTTGGGGACTGTCGTTGCTTGTAATCCTACCCATTATTATCTTCGCAGACACCGTCCCTGCGCAGGATGGAGGGGTGGACTGCAATTTCATGTGGCCTGAGTCTTCGTGGTCCGAAGCGTTCGTGGTTTATACGTTCCTACTAGGGTTTTTGCTCCCCGTTGGAGCCATTTGTTTGTGCTACTGCTTGATCGTGGTACGCATGCGGGCCGTGGGTTTGAAAGCAGGCTGGTTGCAGAGGCGACGCTCTGAGAAGAAGATCACACGCATGGTGCTGCTGGTGGTCGCTGTTTTTGTGCTCTGCTGGATGCCGTTTTACATCGTGCAGTTGATAAGTGTGTTTCGCAAGCCACCGGACCCCATGGTGACTCAGCTCTTTGTTATTCTGAGCTATGCCAACAGCGGCGCCAACCCCATTCTCTATGGGTTTGTGTCAGACAACTTCCGCCGCTCATTCCAGCGCATCATATGCTTTCGCTGGCTGGAGAATGGACTGGATGCCGAGCAGGTGGACTACTGTGCTGTGGCCCTTCGCCGGCAGACCACATGCGGCCAACAGGACTTTCCCAAAGAGTGCTTGGCTTCTGATATGGTGTTTCGTAATGGAACCTGCACATCTCGTACCACCACTCTGTGAGAGGGTATTCGGTGAGAGAGTTTAAAGAGATAGATTATCCAAAAATGCATATTCTGTCTATTACTTCTGAAGTGGACTGACTTTCTTAGGAGGTATGTTGGGAGGAcaatacagtgaaaaaaaaaagattttcgttAAATCgtcgcaaacaatttatatgggctgaatttaaaaaaaattaatttaatgaaataatgttcaacttaattttttttttgtttaaaattaagctcaaataaattgtttgcaacaacttaCCATAAATTGTTTTTACTatatccaatgaatcattttttttccagtgtgtgTTAGATTTTGTTGACAGATTATTGATTATTGAATGATTATTTTTGATGAttgtttaaacaaattatttaaaatgagctgaattaacacaattcttgttttttgGGATAACctacttgttttttttgttcaatccacttaaatttgtaatataattaattatattaacttaatcgatttgtgttcaGACAACATGAATGAGCTGTGtgaaacccaacatttttacagtgcacaaagGTTTAGATCAGGGTgagaaaataatgacagaatttatatatttttgggtaaactatgtcTCAATTGCTTTGTTCATTGAAACAGGAAGTCCAATATCAGTGGATGagagttaaaactattatttaatgtatttaaataaatacaaaaaggtTGTTTTGAACAGTTTCATTGTAAAAAGCGATTAGCTACTTTACTTGAGTAAAGTAAGTAAACCTGTAGCCTTAAAGTTGACTTTACTAAAAAAATAATGAGTAAACCCATTATAACTCAGAAATATTAAGTTGGCTTAATTTCTATATTTATGAACatattcatttacttaataaatttaaggcaatgggtttactcagtttttaatgtaatgtcAACTAACTGCATTTACAGTGTAGGCATAATCAAAGTAGAATGATCAAtactctacactacctgacaaaagtcttgtcgcctatccaagttttatgaacaacaaataataacttgacttctagttgattatttggtatcagaagtggcttatatgaaaggcaaaggcctctagattatgcttattttaccaaaaaaaaatgtgatcatgccttgatttttaattatttaattaggacagtaaggtctgactttactaagactaaagtcttgtcacttaacagaaataatgtacactatagaatataaagtcatggtgcagaggaaaaaataataatattgtatatgaCTAATATGAGCTTGGACCACGCCATTCATAAATCtcagcaatgactcaaataacttattattaaagtcatctggaatggcaaagaaagctttcttgcagagttcatcaagattctttggattcatcttcaatgcctcctctttcatcttactccagacatgcccAATGATGtttatttctggtgactgggctggccaatcctggaacaccttgactttctttgctgaTTGTTATTCAGTTTTATAGATGATTCATTAGATAAATCTacattctgctacttttccaaatgatcaactagaagtaaaaTTATTGTTTGCTGCTCTGACAACTAAAAtccatgacaagacttttgtcaggtagtgtacacaaagctctgaaaaaaataaataaataagagatcaCTCAAAAGTTATCATCACTTTTTATAAGCTATTATTAGCTTAAGGGAATGGTTGACATTAATAAAAGTACATGATATTATTAATAGCATGAACACTTTACTTCTAATGTGGTCTCATTTATCCTTGCTTGGCaagatttcattttcaaaatcaCATTTTCCCCATGTAGACTTGACTTCACATTGGGTTAATGTTGGCCACATGAATTTGCTTTATCAACCAAGAAAATAATGCTTAGTTTGAAATTGACAGTTGTGTTGATATACCTCATGCAACAATACACAATTGGCCATTTAAAAAATTTAGCTGAGATGTCAAGCTCTCAAAACCTTCAAAGCAAAGTCAGAATTTATTTGTTCTCAGGATGCAATTGTGAAAGAATGACAATGTACCGTGTCTCAGTATGCCTTAACAATTGAAAAACACTGCAGAATTTCCATCAAAAGCTGTAAGTGGTGAAGAACATCCAGCAAGAGCTCATTATGAAGCACCGTTGTTAAATATGTGATCTTGTTAACTGTAGATTAACTGTAGCTCAATGTTTATATGAAACATATTCAACTGATTACTTTGTGGATTCTAATTCTGTGTACTTCTCAATGCATACCTAAACGCACATGACCACGACATAACAATGCATCAGTTCTTGCTTAAATCATTTTTCTTTGTTAGGTTTGTAAGCCAAATGGTTCTTACAAGTCAATGACCAAATTTTACtctgcttttaaaatgtgttgtggGTCCAAACTGTTGATATTTTGAAGTAAAAGACAATAAAAGTTGAGTGAATCTGG
>TCONS_00067403
TTCGACAATATGCTCTGGATCACATTCTCCACCATGAGCTTCATGCTTGCAACCGATCTGCCTTTCAACTCTACCGGTGACTACGAGTATTATGAATCTGAACCTGACGCCAGCAAAATCATCATCCCCTCCATCTATGCACTGGTTTGTTGCATCGGCGTCACAGGAAACGCAATGGTCATCTACGTCATCCTCAAATACGCCAAAATGAAGACGGCCACCAACATCTACATTCTTAATCTAGCCATAGCGGATGAACTCTTCATGCTGAGCGTCCCGTTCCTGGCAACTTCAGCCGCAGTGCACCACTGGCCGTTCGGTTCACTTATGTGTCGCTTGGTTCTCAGCGTGGACGGCATTAACATGTTCACCAGCATCTTCTGCCTGACCGTGTTGAGTGTGGATCGCTATATCGCTGTCGTGCACCCAATCAAAGCGGCTCGCTACCGACGCCCTACAGTTGCAAAAGTGGTCAACGTTTGCGTTTGGGGACTGTCGTTGCTTGTAATCCTACCCATTATTATCTTCGCAGACACCGTCCCTGCGCAGGATGGAGGGGTGGACTGCAATTTCATGTGGCCTGAGTCTTCGTGGTCCGAAGCGTTCGTGGTTTATACGTTCCTACTAGGGTTTTTGCTCCCCGTTGGAGCCATTTGTTTGTGCTACTGCTTGATCGTGGTACGCATGCGGGCCGTGGGTTTGAAAGCAGGCTGGTTGCAGAGGCGACGCTCTGAGAAGAAGATCACACGCATGGTGCTGCTGGTGGTCGCTGTTTTTGTGCTCTGCTGGATGCCGTTTTACATCGTGCAGTTGATAAGTGTGTTTCGCAAGCCACCGGACCCCATGGTGACTCAGCTCTTTGTTATTCTGAGCTATGCCAACAGCGGCGCCAACCCCATTCTCTATGGGTTTGTGTCAGACAACTTCCGCCGCTCATTCCAGCGCATCATATGCTTTCGCTGGCTGGAGAATGGACTGGATGCCGAGCAGGTGGACTACTGTGCTGTGGCCCTTCGCCGGCAGACCACATGCGGCCAACAGGACTTTCCCAAAGAGTGCTTGGCTTCTGATATGGTGTTTCGTAATGGAACCTGCACATCTCGTACCACCACTCTGTGA

Function

symbol description
sstr1b Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SSTR4 (somatostatin receptor 4).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004994 somatostatin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120410-2 Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SSTR4 (somatostatin receptor 4).

Ensembl:

ensembl_id ENSDARG00000067925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067402 False 4507 mRNA 0.39 2 18412621 18445751
TCONS_00067403 True 1119 mRNA 0.52 2 18415071 18416741

Neighbor

gene id symbol gene type direction distance location
XLOC_034617 CT027807.1 coding downstream 164930 18247037 ~ 18247691 (-)
XLOC_034616 peli3 coding downstream 244128 18121722 ~ 18168493 (-)
XLOC_034615 CU457795.1 coding downstream 550081 17862425 ~ 17862540 (-)
XLOC_034614 ecsit coding downstream 595700 17805329 ~ 17816921 (-)
XLOC_034613 si:dkey-106g10.7 coding downstream 632573 17760713 ~ 17780048 (-)
XLOC_034619 znf16l coding upstream 16491 18462242 ~ 18470963 (-)
XLOC_034620 rgs12a coding upstream 28812 18474563 ~ 18547420 (-)
XLOC_034621 msantd1 coding upstream 103918 18549669 ~ 18554603 (-)
XLOC_034622 dtx4a coding upstream 112188 18557939 ~ 18601206 (-)
XLOC_034623 si:ch211-119e14.1 coding upstream 161047 18606798 ~ 18617187 (-)
XLOC_034610 CT030012.1 non-coding downstream 766871 17641188 ~ 17645750 (-)
XLOC_034601 CU179702.2 non-coding downstream 1032311 17358084 ~ 17380310 (-)
XLOC_034597 CU179757.1 non-coding downstream 1148312 17261616 ~ 17264309 (-)
XLOC_034627 NA non-coding upstream 271009 18716760 ~ 18730474 (-)
XLOC_034628 NA non-coding upstream 317196 18762947 ~ 18773947 (-)
XLOC_034630 NA non-coding upstream 469791 18915542 ~ 18919985 (-)
XLOC_034631 NA non-coding upstream 545167 18990918 ~ 19003533 (-)
XLOC_034632 NA non-coding upstream 562004 19007755 ~ 19015887 (-)

Expression


Co-expression Network