XLOC_034882 (dis3l)


Basic Information

Item Value
gene id XLOC_034882
gene name dis3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34241319 ~ 34256374 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067855
AGATGGcgcagatttatttaaaaacaaaacaaattgcttAGCACAGTAAAGAAGAATAGAGGAAATTGTATGTTGTTTCTGAATGTTATCTTAAACTTTAGCTGATTATAGAAGATCCGATCATGATTAAAACTGAGAAGATATTACATTTGAACAGCTCAAAGGGTAGGAAGGTTCGAGTGGTCCGGGAACATTATATGAGGGAGCAGGTGCCGTGCGGGAGCTCTCTCTGTCAGGCTGACTGTCAGAACGTTGGCAAAGTGCTGTCCAGGGATGTGACCCACTATGTGGTCCCGGATGTTGGAGTGGTTCGGGATTTTCTGGAGATCCTGGAGTTCAGGGAGCTTCAGGGAATCGTGTTGACCCAGACAGCTTACCAAACTGTTCAGCACACCCGTGGACGCAGGCATTATAACCGACTACGTTCTTTACTGAAGGATCCTCGTCACGATTGTGTGCTCTTTGCCAATGAGTTTCAGCAATACTCCTACTGCCCCAGAGAAAAGGGTGAGTCCCAGGACAAATGGCATACAAGAAATGTGTACAATGCAGCAGTTTGGTATTATAATCATCTGGCTGGACTCCAACCAGTGGTCATGATTACTGAAGACAGAGATGCTATTTCAGAATTTAGTGCTTCAAACAGTGGAGTTTTTGTCATTTCAACTCAGGAGTACCTGTTAGGTTTCTGGCCGGACCTGCAAGCTGCACATGATCTGTACCACTCCATTGCCCAGACGCTTCAGGAGAGAGAGAATGATGGAGCAGAGAAAGTGTACACTGAACACCTGCCTGCAGAGGTGCTGGAAGCTGGCATTAAATCTGGAATGTACATCCAGGGGATCCTCAGTGTGAACAAGCACCGTGCGCAGCATGAAGCCTTTGTCCGTTATGAGGGTTCAGCCAGCAAAAATACAGAGCTCAACAGTGATGTGCTAATCAATGGCGCAAAACATCGCAATCGAGCCGTGCATGGAGATGTGGTTGTCATTGAGCTGTTTCCCCGTAATGAGTGGAAGGGCAGGACTATGGCACTAACAGAAGGTCAGGGGGAGGAGCGCCCACTAGAGGACACACAGAGTCAGCCTATGCCCACAGGCCGGGTGGTGGGAATTCTGCAGAGGAACTGGAGAGACTATGTTGTGACTTTACCTCCTTTTGAGGAGATGCAGTCCCAAAGCCGAAATTCACAAAAAATTCTGGTTGTTCCATGGGACTACCGAATCCCCAAAATCCGTATCAGCACACAGCAGGCTGAGGCGCTGCAGGACCAAAGAGTGATTGTGCGTCTGGATTCATGGGAAAGTACTTCAGTCTACCCAAATGGGCACTTTGTGAGGGTTCTGGGGAAATCAGGCGAGCTGGAGACTGAGATTCAGACCATACTGGTGGAGAACTGCATTCATGTGCCACCTTTCTCAGAGGCGCAGCTGCGAGAGATGCCTGTTAATACAGAGGAGAACCCATGGCAGATGGACAGCAATGAGGTTTCCTCTCGCCGGGATTTAAGAGACTCTCACCTGGTGTTCAGTATTGATCCTAAAGGCTGTGAGGATGTGGACGACACCTTGTCTGTGCGGACTCAGCCTGGGGGAAAACGGTTAGAGCTTGGTGTCCACATTGCTGATGTGACTCACTTTGTCAGAGAGGGCTCTCTAACTGACCTGGAGGCGAGGTCCAGGGCAACCACTTACTACCTGGCTGATCGCAGATATGACATGCTGCCTGCGGTGCTGAGTGCTGACCTGTGCTCTCTGCTGGGAGGGGTGGACCGATATGCCATGAGTGTGCTGTGGGAGCTGGATGCGGAGACTCTGGAGGTGTGTTCGGTCTGGTTTGGCCGTACTCTCATCCGCTCCTCGTATCAGCTTCACTATGAGCTGGCCCAGAGCCTGCTGAATGGGGAGGAGGTTGAGGTACCTGAGCTAAACCCACTCAAAGGCTCACAGCGGGACCAGAAAATGTCAGAGCTCCTGCAGGCTCTGGAGACCCTGACGAGGGTGGCAAGGCACCTCCGGGCACAGCGGGATAAAGGTGGCGCTCTGGAGTTGGAGGGGGTGGAAGTGAGGGCTCAGCTGGATGAGGAGAAGAACATCACAGCACTCGTGCCCAAACAGCCACTGGAGGTTCACGAGACTGTGGCAGAGTGCATGATCTATGCCAACCACTGGGTGGCACGCAAGATACAAGAGAGCTTTCCACATCACGCTCTTCTGCGTCACCATCCACCACCCAAGCAGGAGTTTTTCAATCACCTGATTGACAGTGCCAAGGCCCATGGTTTCAGTATTGATACaagatCAAACAGGGCTTTGGCTGATTCTCTGGAACGTGCTGTGGATCCTCGGGACCCCCTGGTGAACAGGTTGTTGAGGATGATGGCCACCCAGGCAATGTCTAATGCCCTTTACTTCTCTACGGGATCCTGTCCAGAGGAGCAGTATTATCACTATGGTCTTGCTCTGGCTCGATACACTCACTTCACCTCTCCAATCAGACGATACGCAGATGTAATAGTTCACCGGCTGCTTATGGCTGccgttcagctggagaaagacgAATCGCCAAGCAAAACGTTGGCCTGTAACAAAGAGCTTGAGGAGCTGGCTCAAcacatcaacaacaaaaacagagCAGCGCAGCATTCACAGAAGCAGTCCATTGAGCTCTTCCAGTGCATGTACTTCAGAGATAAAGACTCACACACAGATGAGCGCTGTGTGGCTGATGCTGTCATCTATGCTGTCAGAGCAAACGGCTTTCTTGCTTTCGTGCCACAGTATGGTTTAAAGGGAGCTGTGTATCTCAAGGACAGAGAAGGTCAGGTGATCAGTGTTGATGGAGATGGAAAGTGTGAGTGGAAGCCTGGGACATTGCAGAAATACTCAGACAAGATCATCACCAGCACGAGCACTGGAACCCATACCTTTTACCTTTTTAACCATGTTACAGTTCGTATCTCTGTTGAACCCTCCCGTTGCCATGCCGACAGcctaaatctggagcttatcagCAACAAGCCCCACTGCGCTGTGCAACCCGAGTCTCAGCCAGCTGGTGGAGGACGGTCTGGGCTGGTTGAAGAGGTGGTGCGCTGGGCAGAAGAAGCCTCGCTTCAGGCGGAAGAGCAGAGAGGGAGGAAACCCAAACTGAGCAAAGAGGAGAAGCAGTTCAGACAGAGTAAAACACCTAACCTCTATGTCCTCTTACAGGAGATCAGTGAACTCGCTCTGATGGATCTGTCCATCTGCCAAATCACTAATTCAGAGGAACAGACTTGCACTGTGTCTTCTTAGCCTATGTTGGTGGTGGTTCTATTGTTGACTGGACAGAATGTTTTGCACTGAGAGCTTTTGGGATGGTTTGGTCATTTTTGGTAGATTCAGACCTTGTGTAGAGCTGCATTGACATGCATAGAGATAAACTAGAAAACATTAAGGACTAATTAATCCAGGCTCCTTGGATATATTTTTGGTGTTCTCAATTGCATTTGATAGAATTCTCAGAATAAATAATATGACTGCA

Function

symbol description
dis3l Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in rRNA catabolic process. Predicted to act upstream of or within RNA phosphodiester bond hydrolysis, exonucleolytic. Predicted to be located in cytoplasm. Predicted to be part of cytoplasmic exosome (RNase complex). Orthologous to human DIS3L (DIS3 like exosome 3'-5' exoribonuclease).

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic biological_process
GO:0000177 cytoplasmic exosome (RNase complex) cellular_component
GO:0000178 exosome (RNase complex) cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0000175 3'-5'-exoribonuclease activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-070209-95 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in rRNA catabolic process. Predicted to act upstream of or within RNA phosphodiester bond hydrolysis, exonucleolytic. Predicted to be located in cytoplasm. Predicted to be part of cytoplasmic exosome (RNase complex). Orthologous to human DIS3L (DIS3 like exosome 3'-5' exoribonuclease).

Ensembl:

ensembl_id ENSDARG00000053200

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067855 True 3525 mRNA 0.50 17 34241319 34256374

Neighbor

gene id symbol gene type direction distance location
XLOC_034881 NA coding downstream 5139 34235518 ~ 34236180 (-)
XLOC_034880 crybgx coding downstream 16308 34222433 ~ 34225011 (-)
XLOC_034879 smad6a coding downstream 48485 34182963 ~ 34192834 (-)
XLOC_034878 smad3a coding downstream 92056 34102661 ~ 34149263 (-)
XLOC_034877 NA coding downstream 154288 34079036 ~ 34087031 (-)
XLOC_034883 si:ch211-98n17.5 coding upstream 146 34256520 ~ 34265481 (-)
XLOC_034884 CR388195.1 coding upstream 37261 34293635 ~ 34294613 (-)
XLOC_034885 madd coding upstream 61027 34317401 ~ 34413398 (-)
XLOC_034886 nr1h3 coding upstream 157820 34414194 ~ 34448076 (-)
XLOC_034887 NA coding upstream 208033 34464407 ~ 34468968 (-)
XLOC_034876 NA non-coding downstream 163782 34068391 ~ 34077537 (-)
XLOC_034869 NA non-coding downstream 629103 33463428 ~ 33612216 (-)
XLOC_034868 BX914196.1 non-coding downstream 828899 33412304 ~ 33412420 (-)
XLOC_034890 NA non-coding upstream 430441 34686815 ~ 34725938 (-)
XLOC_034891 NA non-coding upstream 517223 34773597 ~ 34777267 (-)
XLOC_034892 NA non-coding upstream 530202 34786576 ~ 34792906 (-)
XLOC_034894 CR356247.1 non-coding upstream 721977 34978351 ~ 34978469 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_07723366_07737315 DIS3L coding CI01000026 null 7723114 ~ 7737315 (-)
bowfin (Amia calva) AMCG00007442 NA coding CM030123.1 CM030123.1 18624723 ~ 18633969 (-)