XLOC_035433 (fgd1)


Basic Information

Item Value
gene id XLOC_035433
gene name fgd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 7737062 ~ 7772319 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069530
CCCTCAGGACGTCCCACCTCCACCTCCCAAAACACGGCCACCTTTACCTGGGCCAAAGCCTCAAGTGCCCCCGAAACCCCCTCATCTACAGCAGCAGAACGCTCGACGGCCCCGCCCCCCAGACAAGCCCCTCCCACCGCCACCACCATCCCGCCCACTGCCAGCCGACCCCCGCCAATCACGTGCCACCATGCCGAGGGCAGAGGGAAGCTCCTCCCCCACTTGTGTCCTTTCGCTCATCGAGAAGTTTGAGAGAAATCCCCTCTGACCGATTGTCCCTCCCCCCAGCGCAGATGGACGGGAAGCTGGCCAATCGGGACAGCGGAATCGACAGCATCAGCTCGCCTTCACACAGCGAGGAGCTCTGCTTTGTTGGGGACGAGGATCGGGTCGGTCATGAGCGGGAGATTTGTCCGTGTAGCCCAGGACCAGGGATTTCATGTAGTTATGTGGAGGGTCCCGATGAAGAGGGGGCCGGCGGGGAGGAGGCTGGCAGAGACTCAGAGGGAGACAGTGATCTGGAGGAGGGCAGTGGAGACGAGAGCGAGATGAACCCCATGGCTCTACAACCTCTGCCCAAAGCTGAACGACAAGACTCCACTGAGATGTCGGTCCAGCAGCGGGTGTTCAACATTGCTAATGAGCTCCTGCATACGGAGAAGGCGTATGTGTCCAGACTGCACCTCCTGGACCAGGTGTTCTGCGCTCAGCTGATGGAGGAGGCTCGAGCCCGCAGCTCCTTTCCCTGTGAGATGGTCATGGGCATCTTCTCCAACATCTGCTCCATCTACTGCTTCCACCAGCAGTTCCTGCTGCCCGCGCTGGAGAAACGCATGGAGGAATGGGATCTGAACCCCCGCATCGGGGACATCCTGCAGAAACTGGCGCCTTTCCTGAAGATGTACGGCGAGTATGTGAAAAACTTTGACCGGGCGATGGAGCTGGTGAACACCTGGATGCAGCGCTCATCCCAGTTCAAAACCATCATTCACAACATCCAGAAAGAGGAGATGTGTGGGAATCTCACCCTCCAGCACCACATGTTGGAGCCTGTGCAGCGAATCCCTCGCTACGAGCTGCTGCTCAAAGACTACCTGCACCGGCTGCCAGAGGACGCAGACGACTTCAAAGATGCCCAGAAGTCTCTGGAGCTGATCGCCACTGCGGCAGAACACTCAAACGCTGCCATCAGGAAAATGGAGCGCATGAGAAAGCTGTTGAAAGTGTACGAGCTGCTTGGAGGGGAGGAGGATATCGTTAATCCCACTAATGAGCTGATTAAAGAGGGACACATCCTCAAACTGTCAGCTAAAAATGGGACGTCGCAGGATAGATACCTCATTCTGTTCAATGACAGGTTGCTGTACTGCGTCCCTAAACTGAGGCTGATAGGACAGAAATTTGGAGTGCGAGCACGGATTGATGTGGACGGCATGGAGCTGAAGGAGACCAGCAGCATGAACGTACCGCGAACGTTTCTGGTGTCTGGAAAACAGCGCTCGCTAGAACTGCAAGCAAGGACGGAGGAAGAGAAGAGGGATTGGATTCAGGCAATCCAAGCCACTATACAGAGACATGAGCAGACGCTGGAGACCTTCCGGATGCTCAACTGCTCTTTTAGGGAGGAGGATTTAACTCCTCCAAACTCTCCGAATTGCTCAGAGCTTGGAAAGCGAGCGCCCACTCCGATCCGGGAGAAAGAAGTTACGCTGTGCATGAAGTGTCAGGAGCCGTTCAACTCCATCACCAAACGACGCCATCACTGCAAAGCCTGCGGACATgtgGTGTGTGGAAAGTGTTCAGAGTTTCGTGCCCGGCTGTTGTATGATAATAACCGAGCCaaccgtgtgtgtatagactgtTATACCATGCTAGTTGGAGTGCCGCCGTCTCCTGCCAGTCTGAGCAGCAGCACACAGAGACGACGCTCCATCCTAGAGGTACAAGTCTATGTgatgttgctgagacttttatGTGTAAACAAAGCCTTGCAGCTCGTCCCATGACTAATGTGCTTCCCAGAGTCTAGTTAATGCTTTACCAGACTAGATATTGATTTTCTGGTCTCTCCTTCCCTCTCAGGATGTCAAAGCTCAGCGCAGTCTCCCCCTCATCGGCTTCGAGGTGTCCTTACCTGAATCCGGTGACCGCCTGGAACGCCGCTTCGCCTTCAAAATGAGCCAGAGTCATCTGACGGTTTACTTCAGCGCCGACTGTGAGGAGCTGCAGCGCCGCTGGATGGAGGTTTTATCCCGAGCCGGCAGGGGCGAAGAGCTACAATCCAACGGGCCCATTTGTGAAGCCCTGGAGGAGGAGGGGGAGGAGCCAGCGCCTACAGGA
>TCONS_00069531
TTATTGATTTCTGTATTGATCTTGTCTCGTTCAGTGCCCCCGAAACCCCCTCATCTACAGCAGCAGAACGCTCGACGGCCCCGCCCCCCAGACAAGCCCCTCCCACCGCCACCACCATCCCGCCCACTGCCAGCCGACCCCCGCCAATCACGTGCCACCATGCCGAGGGCAGAGGGAAGCTCCTCCCCCACTTGTGTCCTTTCGCTCATCGAGAAGTTTGAGAGCGAGCTTGGGGCGTCCTGCTCAGATAAGCGTCTTTCCATGGAATCAGGCTACGGCGCTTCAGATAAACTGCTGGACAACATGGAGATGACAGCCAACCAATCAGAAATCCCCTCTGACCGATTGTCCCTCCCCCCAGCGCAGATGGACGGGAAGCTGGCCAATCGGGACAGCGGAATCGACAGCATCAGCTCGCCTTCACACAGCGAGGAGCTCTGCTTTGTTGGGGACGAGGATCGGGTCGGGATTTCATGTAGTTATGCTGGCAGAGACTCAGAGGGAGACAGTGATCTGGAGGAGGGCAGTGGAGACGAGAGCGAGATGAACCCCATGGCTCTACAACCTCTGCCCAAAGCTGAACGACAAGACTCCACTGAGATGTCGGTCCAGCAGCGGGTGTTCAACATTGCTAATGAGCTCCTGCATACGGAGAAGGCGTATGTGTCCAGACTGCACCTCCTGGACCAGGTGTTCTGCGCTCAGCTGATGGAGGAGGCTCGAGCCCGCAGCTCCTTTCCCTGTGAGATGGTCATGGGCATCTTCTCCAACATCTGCTCCATCTACTGCTTCCACCAGCAGTTCCTGCTGCCCGCGCTGGAGAAACGCATGGAGGAATGGGATCTGAACCCCCGCATCGGGGACATCCTGCAGAAACTGGCGCCTTTCCTGAAGATGTACGGCGAGTATGTGAAAAACTTTGACCGGGCGATGGAGCTGGTGAACACCTGGATGCAGCGCTCATCCCAGTTCAAAACCATCATTCACAACATCCAGAAAGAGGAGATGTGTGGGAATCTCACCCTCCAGCACCACATGTTGGAGCCTGTGCAGCGAATCCCTCGCTACGAGCTGCTGCTCAAAGACTACCTGCACCGGCTGCCAGAGGACGCAGACGACTTCAAAGATGCCCAGAAGTCTCTGGAGCTGATCGCCACTGCGGCAGAACACTCAAACGCTGCCATCAGGAAAATGGAGCGCATGAGAAAGCTGTTGAAAGTGTACGAGCTGCTTGGAGGGGAGGAGGATATCGTTAATCCCACTAATGAGCTGATTAAAGAGGGACACATCCTCAAACTGTCAGCTAAAAATGGGACGTCGCAGGATAGATACCTCATTCTGTTCAATGACAGGTTGCTGTACTGCGTCCCTAAACTGAGGCTGATAGGACAGAAATTTGGAGTGCGAGCACGGATTGATGTGGACGGCATGGAGCTGAAGGAGACCAGCAGCATGAACGTACCGCGAACGTTTCTGGTGTCTGGAAAACAGCGCTCGCTAGAACTGCAAGCAAGGACGGAGGAAGAGAAGAGGGATTGGATTCAGGCAATCCAAGCCACTATACAGAGACATGAGCAGACGCTGGAGACCTTCCGGATGCTCAACTGCTCTTTTAGGGAGGAGGATTTAACTCCTCCAAACTCTCCGGTTAGTCTTGGAAAGCGAGCGCCCACTCCGATCCGGGAGAAAGAAGTTACGCTGTGCATGAAGTGTCAGGAGCCGTTCAACTCCATCACCAAACGACGCCATCACTGCAAAGCCTGCGGACATgtgGTGTGTGGAAAGTGTTCAGAGTTTCGTGCCCGGCTGTTGTATGATAATAACCGAGCCaaccgtgtgtgtatagactgtTATACCATGCTAGTTGGAGTGCCGCCGTCTCCTGCCAGTCTGAGCAGCAGCACACAGAGACGACGCTCCATCCTAGAGAAGCAGGCCTCGGTGGCGGCTGAAAACAGTGTGCTGTGTAGTTTCCTGCACCACATGGAGAAGGGTAGTGGCCGTGGTTGGCAGAAGGCCTGGTTCGTCATCCCTGAAAATGAACCACTGGTGCTGTATATCTATGGTGCTCCACAGGATGTCAAAGCTCAGCGCAGTCTCCCCCTCATCGGCTTCGAGGTGTCCTTACCTGAATCCGGTGACCGCCTGGAACGCCGCTTCGCCTTCAAAATGAGCCAGAGTCATCTGACGGTTTACTTCAGCGCCGACTGTGAGGAGCTGCAGCGCCGCTGGATGGAGGTTTTATCCCGAGCCGGCAGGGGCGAAGAGCTACAATCCAACGGGCCCATTTGTGAAGCCCTGGAGGAGGAGGGGGAGGAGCCAGCGCCTACAGGAGAAAGCACATGA
>TCONS_00069532
ATTTCTGTATTGATCTTGTCTCGTTCAGTGCCCCCGAAACCCCCTCATCTACAGCAGCAGAACGCTCGACGGCCCCGCCCCCCAGACAAGCCCCTCCCACCGCCACCACCATCCCGCCCACTGCCAGCCGACCCCCGCCAATCACGTGCCACCATGCCGAGGGCAGAGGGAAGCTCCTCCCCCACTTGTGTCCTTTCGCTCATCGAGAAGTTTGAGAGCGAGCTTGGGGCGTCCTGCTCAGATAAGCGTCTTTCCATGGAATCAGGCTACGGCGCTTCAGATAAACTGCTGGACAACATGGAGATGACAGCCAACCAATCAGAAATCCCCTCTGACCGATTGTCCCTCCCCCCAGCGCAGATGGACGGGAAGCTGGCCAATCGGGACAGCGGAATCGACAGCATCAGCTCGCCTTCACACAGCGAGGAGCTCTGCTTTGTTGGGGACGAGGATCGGGTCGGTCATGAGCGGGAGATTTGTCCGTGTAGCCCAGGACCAGGGATTTCATGTAGTTATGTGGAGGGTCCCGATGAAGAGGGGGCCGACTCAGAGGGAGACAGTGATCTGGAGGAGGGCAGTGGAGACGAGAGCGAGATGAACCCCATGGCTCTACAACCTCTGCCCAAAGCTGAACGACAAGACTCCACTGAGATGTCGGTCCAGCAGCGGGTGTTCAACATTGCTAATGAGCTCCTGCATACGGAGAAGGCGTATGTGTCCAGACTGCACCTCCTGGACCAGGTGTTCTGCGCTCAGCTGATGGAGGAGGCTCGAGCCCGCAGCTCCTTTCCCTGTGAGATGGTCATGGGCATCTTCTCCAACATCTGCTCCATCTACTGCTTCCACCAGCAGTTCCTGCTGCCCGCGCTGGAGAAACGCATGGAGGAATGGGATCTGAACCCCCGCATCGGGGACATCCTGCAGAAACTGGCGCCTTTCCTGAAGATGTACGGCGAGTATGTGAAAAACTTTGACCGGGCGATGGAGCTGGTGAACACCTGGATGCAGCGCTCATCCCAGTTCAAAACCATCATTCACAACATCCAGAAAGAGGAGATGTGTGGGAATCTCACCCTCCAGCACCACATGTTGGAGCCTGTGCAGCGAATCCCTCGCTACGAGCTGCTGCTCAAAGACTACCTGCACCGGCTGCCAGAGGACGCAGACGACTTCAAAGATGCCCAGAAGTCTCTGGAGCTGATCGCCACTGCGGCAGAACACTCAAACGCTGCCATCAGGAAAATGGAGCGCATGAGAAAGCTGTTGAAAGTGTACGAGCTGCTTGGAGGGGAGGAGGATATCGTTAATCCCACTAATGAGCTGATTAAAGAGGGACACATCCTCAAACTGTCAGCTAAAAATGGGACGTCGCAGGATAGATACCTCATTCTGTTCAATGACAGGTTGCTGTACTGCGTCCCTAAACTGAGGCTGATAGGACAGAAATTTGGAGTGCGAGCACGGATTGATGTGGACGGCATGGAGCTGAAGGAGACCAGCAGCATGAACGTACCGCGAACGTTTCTGGTGTCTGGAAAACAGCGCTCGCTAGAACTGCAAGCAAGGACGGAGGAAGAGAAGAGGGATTGGATTCAGGCAATCCAAGCCACTATACAGAGACATGAGCAGACGCTGGAGACCTTCCGGATGCTCAACTGCTCTTTTAGGGAGGAGGATTTAACTCCTCCAAACTCTCCGGTTAGTCTTGGAAAGCGAGCGCCCACTCCGATCCGGGAGAAAGAAGTTACGCTGTGCATGAAGTGTCAGGAGCCGTTCAACTCCATCACCAAACGACGCCATCACTGCAAAGCCTGCGGACATgtgGTGTGTGGAAAGTGTTCAGAGTTTCGTGCCCGGCTGTTGTATGATAATAACCGAGCCaaccgtgtgtgtatagactgtTATACCATGCTAGTTGGAGTGCCGCCGTCTCCTGCCAGTCTGAGCAGCAGCACACAGAGACGACGCTCCATCCTAGAGAAGCAGGCCTCGGTGGCGGCTGAAAACAGTGTGCTGTGTAGTTTCCTGCACCACATGGAGAAGGGTAGTGGCCGTGGTTGGCAGAAGGCCTGGTTCGTCATCCCTGAAAATGAACCACTGGTGCTGTATATCTATGGTGCTCCACAGGATGTCAAAGCTCAGCGCAGTCTCCCCCTCATCGGCTTCGAGGTGTCCTTACCTGAATCCGGTGACCGCCTGGAACGCCGCTTCGCCTTCAAAATGAGCCAGAGTCATCTGACGGTTTACTTCAGCGCCGACTGTGAGGAGCTGCAGCGCCGCTGGATGGAGGTTTTATCCCGAGCCGGCAGGGGCGAAGAGCTACAATCCAACGGGCCCATTTGTGAAGCCCTGGAGGAGGAGGGGGAGGAGCCAGCGCCTACAGGAGAAAGCACATGA
>TCONS_00069533
ATAAAGCTGTTGAAAGTGTACGAGCTGCTTGGAGGGGAGGAGGATATCGTTAATCCCACTAATGAGCTGATTAAAGAGGGACACATCCTCAAACTGTCAGCTAAAAATGGGACGTCGCAGGATAGATACCTCATTCTGTTCAATGACAGGTTGCTGTACTGCGTCCCTAAACTGAGGCTGATAGGACAGAAATTTGGAGTGCGAGCACGGATTGATGTGGACGGCATGGAGCTGAAGGAGACCAGCAGCATGAACGTACCGCGAACGTTTCTGGTGTCTGGAAAACAGCGCTCGCTAGAACTGCAAGCAAGGACGGAGGAAGAGAAGAGGGATTGGATTCAGGCAATCCAAGCCACTATACAGAGACATGAGCAGACGCTGGAGACCTTCCGGATGCTCAACTGCTCTTTTAGGGAGGAGGATTTAACTCCTCCAAACTCTCCGGTTAGTCTTGGAAAGCGAGCGCCCACTCCGATCCGGGAGAAAGAAGTTACGCTGTGCATGAAGTGTCAGGAGCCGTTCAACTCCATCACCAAACGACGCCATCACTGCAAAGCCTGCGGACATgtgGTGTGTGGAAAGTGTTCAGAGTTTCGTGCCCGGCTGTTGTATGATAATAACCGAGCCaaccgtgtgtgtatagactgtTATACCATGCTAGTTGGAGTGCCGCCGTCTCCTGCCAGTCTGAGCAGCAGCACACAGAGACGACGCTCCATCCTAGAGAAGCAGGCCTCGGTGGCGGCTGAAAACAGTGTGCTGTGTAGTTTCCTGCACCACATGGAGAAGGGTAGTGGCCGTGGTTGGCAGAAGGCCTGGTTCGTCATCCCTGAAAATGAACCACTGGTGCTGTATATCTATGGTGCTCCACAGGATGTCAAAGCTCAGCGCAGTCTCCCCCTCATCGGCTTCGAGGTGTCCTTACCTGAATCCGGTGACCGCCTGGAACGCCGCTTCGCCTTCAAAATGAGCCAGAGTCATCTGACGGTTTACTTCAGCGCCGACTGTGAGGAGCTGCAGCGCCGCTGGATGGAGGTTTTATCCCGAGCCGGCAGGGGCGAAGAGCTACAATCCAACGGGCCCATTTGTGAAGCCCTGGAGGAGGAGGGGGAGGAGCCAGCGCCTACAGGAGAAAGCACATGA

Function

symbol description
fgd1 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be involved in cytoskeleton organization and filopodium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in X-linked Aarskog syndrome and non-syndromic X-linked intellectual disability. Orthologous to human FGD1 (FYVE, RhoGEF and PH domain containing 1).

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04810 Regulation of actin cytoskeleton
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-081104-33 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be involved in cytoskeleton organization and filopodium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in X-linked Aarskog syndrome and non-syndromic X-linked intellectual disability. Orthologous to human FGD1 (FYVE, RhoGEF and PH domain containing 1).

Ensembl:

ensembl_id ENSDARG00000100402

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069530 False 2340 mRNA 0.56 15 7737062 7772307
TCONS_00069531 False 2346 mRNA 0.55 17 7740004 7772319
TCONS_00069532 False 2397 mRNA 0.56 16 7740010 7772319
TCONS_00069533 True 1143 mRNA 0.54 10 7756893 7772319

Neighbor

gene id symbol gene type direction distance location
XLOC_035432 CR385024.1 coding upstream 85092 7644265 ~ 7651970 (+)
XLOC_035431 NA coding upstream 140968 7587459 ~ 7596094 (+)
XLOC_035430 pcsk1nl coding upstream 357671 7359294 ~ 7379391 (+)
XLOC_035428 ssuh2rs1 coding upstream 384784 7311478 ~ 7352278 (+)
XLOC_035429 selenoh coding upstream 419618 7315625 ~ 7317444 (+)
XLOC_035434 tfe3a coding downstream 6451 7778770 ~ 7809451 (+)
XLOC_035435 NA coding downstream 52453 7824772 ~ 7849794 (+)
XLOC_035436 cxxc1a coding downstream 81811 7854130 ~ 7873041 (+)
XLOC_035437 mbd1a coding downstream 102791 7875110 ~ 7912936 (+)
XLOC_035438 si:ch211-169p10.1 coding downstream 203426 7975745 ~ 8034978 (+)
XLOC_035425 CU862015.1 non-coding upstream 643179 7086916 ~ 7093883 (+)
XLOC_035422 NA non-coding upstream 778888 6954947 ~ 6958174 (+)
XLOC_035421 NA non-coding upstream 832680 6903958 ~ 6904382 (+)
XLOC_035442 CU928118.1 non-coding downstream 549163 8321482 ~ 8321596 (+)
XLOC_035454 BX284664.1 non-coding downstream 1338753 9111072 ~ 9111190 (+)
XLOC_035458 NA non-coding downstream 2022549 9794868 ~ 9796429 (+)
XLOC_035459 NA non-coding downstream 2082419 9854738 ~ 9860610 (+)

Expression


Co-expression Network