XLOC_035472


Basic Information

Item Value
gene id XLOC_035472
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 10694417 ~ 10707185 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071918
atgaaATGTATTCATGTACATCATGCACAGAGATATCAAAGGTCTAATGAAATATCTAAtcacttttcatttattttttgtattttttttaacagcctCTGCCCAAGGAGCCGTCCTAAAGGACTTCAGATTGCGGTGAGGAGGTTTGCTGACATTCACAGGAGCGACGCCAAACAGGAATCATCCATCAGCCCCCACACATGTAGTGTCCATCCCTTCATCCCGGAGCTAAAGATATCCGCTGCCCTTCTCTCCATCGTTCCCCAAACTGCAAGCGGAAGCCGTGTTTTGGTTCCATTCAATCAAGCTTCTCGACGGTTTCACGCAGGTCATCGAGTCCCAGCAGTCCGCCATAATCTCACAACAAGAGGACGTGTGTGACATTTCCAACAGAACCCTTGACACAATTGAACTGTTTAAGTTTCCATCTCCAAATGCATTCGCTTTCGGACAGAGAAGACAGTTTGCGCACCACTGAATGAGTTTAAAAAGGCTGTTTACGAATGACTCCAACTACAGCTTCAGAGAAAATTCCATGGATGACCTTAAAAGATACACCGGAGATCATCTGTAAAGGAATAAGGTGTAATTACGGAAGAGAAAAGCAGCAGATGACTGACGTATCCTGTAGATTTGACCTCACACGGTTTTACCATATGGATTGTGCGCCGCTGAGCTCGGAGAATAGCAATGCACTGATGCCGTCAACTTTAATCATGGGTGATTTAAAGATTAGCAAACAATGTGTGGATGTCATCTGTCCCTTCCTCTCTGGGGCGTCTCTCTATCTCTTTCACTCTCTGCTTTAAATGTCTGTCTCTAAATCTCTAATGGATATATCATTTCtatcaatactttattttgacTGTAAATTGACACTTGGAGTGTTGAGTTAGATAGGAAATAAAGggtgtgtccatgtaaatgtgtaCAACGCTTTGAGAAGTCTCTCCATGGGCCGAAGTCAACGTGAAATCATTATGCGGTGTGTTTAGTTTGTATAGAAACGATGTTGCAATCAATTTATCAATGAgtaagtttacatggacaccagttaTACgaatttaatatgattaagacaatactctgattaagagtctatcatgtaaacagcgtttttttttttttttggtcacgttatccgactaaagtcataactgaactaaacagaaatcggattaagacgtggagtatgccgattttagtcacattatgaAAGTGCAGTATTGcaactaggggtgtaacggatcaacAATTCACAGTTCGGAACGCACGTGAGCTGCGGATCAATaacttttttgaacttgtaggtatatccaacatttataacaactgCAAATAGATCGCCTCCCGCCTCATTCAAATCATGTGTATGAAAGCTGTCACATTCGGTGGAGGGGAAAAGGAGAGAGGActcttttatttataataaaatcatataaaaggcaaaacagcaaaataaactacATAAATAATGTAGCTTATTACTACGTTATtaagtaaacattaataaaacaaacaaaaaaattaagaaaacaaaTTTAGAAAACATTAATAagacaaacaaacttgactgggcagtcTGGCAGGgatcaggggtctgttcttcggacatcgcttaaattatctaagatgatttggcagatcctggatcttttaatcttcacaactgatctctcgctaatttggttctttaaacaagttcgcgaatcagattagaatgtctggataaactgatctgagatcgctgcgtgtgttgtgaaggacagatctatcgatcctcgaaatgaAGATCAGCAATGCCATGATTGGCTGAGGGCACAGCAGCATGacgacatcatctgattaatattcaattatccatgtgagcaaaatgacgtcaaattagcagtaaacggttcaATGCAAATcgatgtatttagttctacatttaaaaaaaaatgtccttattatagtagccgtttttttttaatcgtgtaaagaataactggttgtttacaaaagcattttgatattggtaaaggcgtctgcaacttttgtgaagcatcaaatcactggtgtattaactgtcaaaacatgtttatgactgca

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0099643 signal release from synapse biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0098657 import into cell biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006812 cation transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071918 True 2091 lncRNA 0.39 2 10694417 10707185

Neighbor

gene id symbol gene type direction distance location
XLOC_035471 tafa5l coding upstream 34940 10561922 ~ 10659477 (+)
XLOC_035470 NA coding upstream 141872 10541514 ~ 10552545 (+)
XLOC_035469 NA coding upstream 171389 10522285 ~ 10523028 (+)
XLOC_035468 NA coding upstream 230669 10460994 ~ 10463748 (+)
XLOC_035467 tbc1d22b coding upstream 244746 10339869 ~ 10449671 (+)
XLOC_035473 mapk13 coding downstream 115884 10823069 ~ 10857042 (+)
XLOC_035474 FP085410.1 coding downstream 136767 10843952 ~ 10844068 (+)
XLOC_035475 brpf3b coding downstream 155168 10862353 ~ 10895273 (+)
XLOC_035476 NA coding downstream 194362 10901547 ~ 10950183 (+)
XLOC_035477 BX321886.1 coding downstream 213020 10920205 ~ 10962489 (+)
XLOC_035465 NA non-coding upstream 446274 10204093 ~ 10248143 (+)
XLOC_035464 NA non-coding upstream 521189 10168525 ~ 10173228 (+)
XLOC_035478 NA non-coding downstream 398321 11105506 ~ 11112567 (+)
XLOC_035479 NA non-coding downstream 612249 11319434 ~ 11319703 (+)
XLOC_035482 NA non-coding downstream 860047 11567232 ~ 11573472 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G72785 fam160a2 unknown CM030128.1 CM030128.1 30978216 ~ 30978825 (+)
tiger barb (Puntius tetrazona) G61459 NA non-coding NC_056706.1 CM032075.1 5143199 ~ 5266038 (-)