XLOC_035481 (tjp2b)


Basic Information

Item Value
gene id XLOC_035481
gene name tjp2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 11425048 ~ 11542289 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069605
ATGCCCGTGAAAGGTGGAGGAGTTGCTTATCCGAATAAAAGCGAGAATGTTAGCTCAGGAATGGAGGAGACGGTTTGGGAGCAGTACACTGTGACTCTACAGCGGGACGCTAAGATGGGCTTTGGAATTGCTGTGTCCGGCGGCCGGGACAATCCAAACGTGGAGAGCGGGGAGACGTCCATCATCGTGTCAGACGTGCTGCCAGGAGGACCGGCCGATGGACTGCTCTTTGAGAACGACCGTGTGATACAGGTCAACACCATCGCCATGAATAATGTGCCTCATTCTTTCGCTGTGCAGTCACTTCGGAAATGTGGGAAAGTGGCCAAAATAACTGTAAAAAGGCCTCGCAAGGTGGCTGTCCTCAAGCGCCCGCCGTCCCCGAGCGGGGATAGCCGTGATTACAACATTTCCAGTTATTATCCTGAGGACAGCCGCAGTGTGCACAGTGACCCAGACTCAGATTACCCTCGGGGAAACGGCGGTCTGGGCTACCCCCGTGACCGAGAGCGTGACCGCAGCCTCGATAAGAGCCGGATAGACTACCTAGATCCGGATTACCGCAGCCAGGACTATGACTCCCGGCGCGAGCGAAGCCGAGGCAGGAGCACGGATAGATCCCCCAGCACTGACAGTGGGTACCGGAGGGACGGCAGCAGGGGCCGGACGCTGGAGCGCGGGTCTAGCCCGGAGCCTCGATATCAACGGCAGCACAGCAGAGGCCGCGGTGGAGGAAGCCCTGCTGGAAGCTATAGCCGGGACCAGGGCTACGACACGCGGAGGTATGACACGCAGGACAGGATGATCAGGAGTCACAGCAGGGACCGGTTGCAGGATCACTCGCCCTCGCCCAGCAGAGAGCGGGACAGGGGAAGAGACCGGTTTAACTATGAGCCCCTGGAGCCACCCGTCAATGTGACGCTGGTCAAAAACAGGCCCAATGAAGAGTACGGCCTCCGCCTGGGCAGCCAGATCTTCATCAAAGAGATGACCAGCACTGGACTTGCTGCCCGAGATGGAAATCTCCAGGAGGGCGATATCATTCTCAAGATCAACGGGACGGTGACGGAAAACCTCTCTCTGAGTGACGCTGGCAAACTGATCGAGAAATCCCGAGGCAAACTTCAGCTTGTGGTCCAGAGAGACCATCGGCAAATCCTGGTGCGCATCCCTGCCCTCGCCGACAGCGACTCGGAGCCGGACGATAATACAGATATGTCATACTTTTAG
>TCONS_00069606
AGCTCAGGAATGGAGGAGACGGTTTGGGAGCAGTACACTGTGACTCTACAGCGGGACGCTAAGATGGGCTTTGGAATTGCTGTGTCCGGCGGCCGGGACAATCCAAACGTGGAGAGCGGGGAGACGTCCATCATCGTGTCAGACGTGCTGCCAGGAGGACCGGCCGATGGACTGCTCTTTGAGAACGACCGTGTGATACAGGTCAACACCATCGCCATGAATAATGTGCCTCATTCTTTCGCTGTGCAGTCACTTCGGAAATGTGGGAAAGTGGCCAAAATAACTGTAAAAAGGCCTCGCAAGGTGGCTGTCCTCAAGCGCCCGCCGTCCCCGAGCGGGGATAGCCGTGATTACAACATTTCCAGTTATTATCCTGAGGACAGCCGCAGTGTGCACAGTGACCCAGACTCAGATTACCCTCGGGGAAACGGCGGTCTGGGCTACCCCCGTGACCGAGAGCGTGACCGCAGCCTCGATAAGAGCCGGATAGACTACCTAGATCCGGATTACCGCAGCCAGGACTATGACTCCCGGCGCGAGCGAAGCCGAGGCAGGAGCACGGATAGATCCCCCAGCACTGACAGTGGGTACCGGAGGGACGGCAGCAGGGGCCGGACGCTGGAGCGCGGGTCTAGCCCGGAGCCTCGATATCAACGGCAGCACAGCAGAGGCCGCGGTGGAGGAAGCCCTGCTGGAAGCTATAGCCGGGACCAGGGCTACGACACGCGGAGGTATGACACGCAGGACAGGATGATCAGGAGTCACAGCAGGGACCGGTTGCAGGATCACTCGCCCTCGCCCAGCAGAGAGCGGGACAGGGGAAGAGACCGGTTTAACTATGAGCCCCTGGAGCCACCCGTCAATGTGACGCTGGTCAAAAACAGGCCCAATGAAGAGTACGGCCTCCGCCTGGGCAGCCAGATCTTCATCAAAGAGATGACCAGCACTGGACTTGCTGCCCGAGATGGAAATCTCCAGGAGGGCGATATCATTCTCAAGATCAACGGGACGGTGACGGAAAACCTCTCTCTGAGTGACGCTGGCAAACTGATCGAGAAATCCCGAGGCAAACTTCAGCTTGTGGTCCAGAGAGACCATCGGCAAATCCTGGTGCGCATCCCTGCCCTCGCCGACAGCGACTCGGAGCCGGACGATAATACAGATATGTCATACTTTTAGCTGATGGACCGCAGAGACACAACATAAAGTCTGGTTGCCTTTAATCTTTAATCATGATTGTGCCTCAACAAATCTGTAAAGCCTTAACACTGTGCTCTCATATTTTTATGCTAAcctctttttttaaaagcttcttttaatcaataaataagtCTGCTCAATTTTA
>TCONS_00069607
ATGGAGGAGACGGTTTGGGAGCAGTACACTGTGACTCTACAGCGGGACGCTAAGATGGGCTTTGGAATTGCTGTGTCCGGCGGCCGGGACAATCCAAACGTGGAGAGCGGGGAGACGTCCATCATCGTGTCAGACGTGCTGCCAGGAGGACCGGCCGATGGACTGCTCTTTGAGAACGACCGTGTGATACAGGTCAACACCATCGCCATGAATAATGTGCCTCATTCTTTCGCTGTGCAGTCACTTCGGAAATGTGGGAAAGTGGCCAAAATAACTGTAAAAAGGCCTCGCAAGGTGGCTGTCCTCAAGCGCCCGCCGTCCCCGAGCGGGGATAGCCGTGATTACAACATTTCCAGTTATTATCCTGAGGACAGCCGCAGTGTGCACAGTGACCCAGACTCAGATTACCCTCGGGGAAACGGCGGTCTGGGCTACCCCCGTGACCGAGAGCGTGACCGCAGCCTCGATAAGAGCCGGATAGACTACCTAGATCCGGATTACCGCAGCCAGGACTATGACTCCCGGCGCGAGCGAAGCCGAGGCAGGAGCACGGATAGATCCCCCAGCACTGACAGTGGGTACCGGAGGGACGGCAGCAGGGGCCGGACGCTGGAGCGCGGGTCTAGCCCGGAGCCTCGATATCAACGGCAGCACAGCAGAGGCCGCGGTGGAGGAAGCCCTGCTGGAAGCTATAGCCGGGACCAGGGCTACGACACGCGGAGGTATGACACGCAGGACAGGATGATCAGGAGTCACAGCAGGGACCGGTTGCAGGATCACTCGCCCTCGCCCAGCAGAGAGCGGGACAGGGGAAGAGACCGGTTTAACTATGAGCCCCTGGAGCCACCCGTCAATGTGACGCTGGTCAAAAACAGGCCCAATGAAGAGTACGGCCTCCGCCTGGGCAGCCAGATCTTCATCAAAGAGATGACCAGCACTGGACTTGCTGCCCGAGATGGAAATCTCCAGGAGGGCGATATCATTCTCAAGATCAACGGGACGGTGACGGAAAACCTCTCTCTGAGTGACGCTGGCAAACTGATCGAGAAATCCCGAGGCAAACTTCAGCTTGTGGTCCAGAGAGACCATCGGCAAATCCTGGTGCGCATCCCTGCCCTCGCCGACAGCGACTCGGAGCCGGACGATATTTCCGAGATGGAGTCATACCATTCCTACTCACCTCAAGATGACCAAAGGTCACGCCAATCTGACCTCTCCTCACACTCATCAAATGATGTGGCACGAGAGAACACCAGGGAGGATCCTCAAAGCAGACTGACAAAATCCCCTGTCACTTCTTCTCCATACAAAACTGTAGAGGAGCCACATCCAGCTCAGGAGGAGAGAGTAGAACCACAGGATGAAGAGCCACCACCACCGCCACCACCACCACCAGCAATAAAGATGACACCCAAGATCCTCCTCAGACCGAGCCCAGAGGATGAGGCCATTTACGGGCCCAACACTGTGATGGTGAGCTTTCAGAAAGGAGAGAGTGTTGGCCTGAGGTTGGCTGGAGGAAATGATGTGGGAATCTTCATCGCAGGAGTGCAGGAGGGCAGTCCAGCTGAAGAAGAGGGTCTGCGTGTAGGAGATCAGATCATGAAGgtaAATAATGTTGACTTTCGGGGAATTGTGCGAGAGGAGGCTGTGCTGTTCCTGCTGGAGATCCCGCGGGGTGAAGTCGTCACCATTTTGGCCCAGAGTAAAACGGAAGTTTATGAAGACATCCTGGTGTCCGGTCGAGGAGACTCGTTTTTCATCCGGACTCATTTTGAGTATGAGAAGGAGCTTCCACAGTGTCACGCTTTCTCCCGGGGTGAGATCTTCAAGGTGGTGGACACTTTATATGACGGCAAACTGGGGAACTGGCTGGCCATCCGACTGGGCAAAGACAACCAGCTGTTGGAGAAGGGCATCATTCCCAATAAGAGCAGAGCGGAGCAGATGGCGAACGTCCAGAACACACACAAGGGCACCGGCAGTGACCGAGCAGATTTCTGGAGGCTGCGGGGTCAGAGAGCGGCTAAGAAGAAGGACCTGCGGAAGAGCCGAGAGGAGAGTTCAGCAGCCGTCGCCACCAGATTCCCAGCCTACGAGAGGGTGGTGCTAAGAGAAGCGGGTTTCCGGAGGCCAGTTGTGCTGTTTGGACCCATCGCTGATGCTGCTAGTGAAAAACTGGCCTCAGAGCTTCCAGACGAGTTTGTCATCGCCAAAACAGAACCCAAAGATGCAGGTTCAGAAAAATCTTCCGGGGTGGTTCGTCTCAACACTATTCGACAGATCATCGAACAGGACAAGCACGCTCTGCTGGACGTCACCCCTAAAGCTGTGGACACCCTGAACTACACGCAGTGGTACCCAATAGTGATCTTCTTCAACCCTGACAGCAAACACGGGGTGAAGGCCATGAGGCAGAGAGTCATCCCCAGCTCAAACCGCAGTGCCCGCAAACTCTACGACCAGGCTCTGAAGCTCAGGAAAACCTGCTCGCACCTGTTTACCGctgttatcgATCTGAACTCGGCTAATGATGCCTGGTATGGCAGTCTGAAGGAGGCCATCAGAGAGCAGCAGAGCCTCGCTGTGTGGGTCTCAGAAGGGAAGCTGGACGGGACGGAGGGCGATCTGGACGTTCATGATGACCGCATGTCATATCTGTCGGCCATGAGCGCTGACTATCTCAGCATGGACAGCCGGATGACCAGCGATTACGACGACACGGCAGACGAGGGCGGCACGTACACTGATAACGAGACCGACGAGCCGCTGGACCGGCAGCGAGTGTCCGCCATCAGCCGCTCCTCTGAGCCCGTCATGCCAGAGGAGATCCTCAGGAAGTCAAGTCCAGAGATTCGAGGTCGAACACGCAGGAAGAACAGCAGAGAGAAGACGAGCGACTGCAGTCCTCCTGTAATGTCCACATTCCTGCCCGACCCTGCCAAGGTAAAAATGCTGTCTCAAGTGGAGGTGTCTCGCGGCCATTACGACCCCTCTCGAAACTACGACTCTCGTTCAAGCAGTCCCGCGAGCAGCGAACATCAGCGCAGCCTGGACTCTCCAGCAAAAGCCAAACCAGCACCTCCACCAACACCCCTGAAGCCTGCCCTCGCGTCCCGCAGCTCCAGAGGCCTCATCAACAGTGAGCCTCCGGCCGACAGTCCTGAAGACCCCTCAAAGAGGTCTTTCCTGGGCAAAGTCAAGGCCTTCGAGCAGATGGATCACTTCGCCCGCTCACAGAGGGTTCTGGAGATACAAGAAGCCCAGAACGCCAGGTTGGAAATTGCTCAGAAACATCCAGACATATACGCTGTTCCCATGAAGTCTCAGAAACTGGACCACAGCAGGCCACAACCTATCGGCTCCAGTGCCCGTCCAGAGCCGCAGACGCCTCCTAGTAAGCTGCCCTACACAGAGAGCCGCGCGCTGGGCCTGAGCGAGGAGCCCGTAGAGGAGTTCAGACAACAGCTGACGGAACAGAGTAAACGCGGCTACTACACCTCCAGCTCCTCACAGAAGTATCAGGATACTGAGCTGTAGAGCTTCTGCTTCAGCTCCCGCACAGCTTCACCATTCCACCCTGCACCAAAACCACTGCTGCTGACTTGGAGGTCCAGTTTGCTTTTTAAGTTTCTCACACGTCTTTTTCACTTCAGAGAAGTTCAACTTCTGTCCGTATGGATGGagtcttattgtttttttatatatacatacatatatatatatatatatatttgcgttAGTTTTGTTGTCATACGTGTGATTCTTGCCTATGCAATTTTTTCAGTTTCTGCAAAGCAACAGAAACGTCTCGCCACGAGTCTCTCTTCTCCCTCCGTCTGTCTTCGCTCCATCGAAACCCGTCGTGTGCTATAGACCAGCTTTTTGTTACTTTCTTTTTATAAGCGAAACGGTTTTAAAACGTCACTCTCTTTAA
>TCONS_00069608
AGCCGAGGCAGGAGCACGGATAGATCCCCCAGCACTGACAGTGGGTACCGGAGGGACGGCAGCAGGGGCCGGACGCTGGAGCGCGGGTCTAGCCCGGAGCCTCGATATCAACGGCAGCACAGCAGAGGCCGCGGTGGAGGAAGCCCTGCTGGAAGCTATAGCCGGGACCAGGGCTACGACACGCGGAGGTATGACACGCAGGACAGGATGATCAGGAGTCACAGCAGGGACCGGTTGCAGGATCACTCGCCCTCGCCCAGCAGAGAGCGGGACAGGGGAAGAGACCGGTTTAACTATGAGCCCCTGGAGCCACCCGTCAATGTGACGCTGGTCAAAAACAGGCCCAATGAAGAGTACGGCCTCCGCCTGGGCAGCCAGATCTTCATCAAAGAGATGACCAGCACTGGACTTGCTGCCCGAGATGGAAATCTCCAGGAGGGCGATATCATTCTCAAGATCAACGGGACGGTGACGGAAAACCTCTCTCTGAGTGACGCTGGCAAACTGATCGAGAAATCCCGAGGCAAACTTCAGCTTGTGGTCCAGAGAGACCATCGGCAAATCCTGGTGCGCATCCCTGCCCTCGCCGACAGCGACTCGGAGCCGGACGGTAAGATCCCACTAGCATACATCTCTCATCCGTAGACTAGCGCTTCCTGCTGTTTGCTCTCCAACACCACACTTTAATTAAAAGCAGATAGCATGATTTGGCTCGGATAAATCTGATTAGTAACGCCACATACACA

Function

symbol description
tjp2b Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in several processes, including establishment of endothelial intestinal barrier; positive regulation of blood-brain barrier permeability; and protein localization to cell-cell junction. Predicted to be located in membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; immature eye; nervous system; pronephros; and segmental plate. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 51; disease of metabolism; and progressive familial intrahepatic cholestasis 4. Orthologous to human TJP2 (tight junction protein 2).

GO:

id name namespace
GO:0090557 establishment of endothelial intestinal barrier biological_process
GO:0098609 cell-cell adhesion biological_process
GO:1905605 positive regulation of blood-brain barrier permeability biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-58 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in several processes, including establishment of endothelial intestinal barrier; positive regulation of blood-brain barrier permeability; and protein localization to cell-cell junction. Predicted to be located in membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; immature eye; nervous system; pronephros; and segmental plate. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 51; disease of metabolism; and progressive familial intrahepatic cholestasis 4. Orthologous to human TJP2 (tight junction protein 2).

Ensembl:

ensembl_id ENSDARG00000023443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069605 False 1230 mRNA 0.58 8 11425048 11493674
TCONS_00069606 False 1345 mRNA 0.55 7 11471350 11493840
TCONS_00069607 False 3937 mRNA 0.55 22 11471359 11542289
TCONS_00069608 True 746 lncRNA 0.58 3 11483080 11491493

Neighbor

gene id symbol gene type direction distance location
XLOC_035480 fxn coding upstream 85441 11325310 ~ 11339607 (+)
XLOC_035479 NA coding upstream 105345 11319434 ~ 11319703 (+)
XLOC_035478 NA coding upstream 312481 11105506 ~ 11112567 (+)
XLOC_035477 BX321886.1 coding upstream 462559 10920205 ~ 10962489 (+)
XLOC_035476 NA coding upstream 474865 10901547 ~ 10950183 (+)
XLOC_035482 NA coding downstream 24943 11567232 ~ 11573472 (+)
XLOC_035483 ift81 coding downstream 99781 11642070 ~ 11681559 (+)
XLOC_035484 atp2a2a coding downstream 144965 11687254 ~ 11744994 (+)
XLOC_035485 NA coding downstream 252369 11794658 ~ 11812164 (+)
XLOC_035486 CR933523.1 coding downstream 317739 11860028 ~ 11860144 (+)
XLOC_035474 FP085410.1 non-coding upstream 580980 10843952 ~ 10844068 (+)
XLOC_035472 NA non-coding upstream 717863 10694417 ~ 10707185 (+)
XLOC_035489 NA non-coding downstream 1223741 12766030 ~ 13063138 (+)
XLOC_035498 NA non-coding downstream 1976233 13518522 ~ 13597892 (+)

Expression


Co-expression Network