XLOC_035487 (ntng2a)


Basic Information

Item Value
gene id XLOC_035487
gene name ntng2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 11993150 ~ 12111461 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069615
CATGCTCTCACAGGCGCTCCTGCTTTTACAGTGCATTATTCTGACTCTCGGCCAGTACGATATCTGTAAGTCGCTGGTCAGCACAGACGATGGACCGACATGGGAATATTACGCTTGCCAGCCCAAACCCATGTCCATGAAGGAGTACATGCAGATTAGAGTGGAGCCTCCCGATATCACATGTGGAAACCCACCGGAGAGATACTGCACTCTGGAAAACCCATACCTGTGTAGTGACGAATGCGATGCCTCCACCAAAGAACTGGCTCATCCTCCAGAGCTGATGCAAGACAGCGAGCGAACCGGACTCATCACCTACTGGCAGACGGTAACATGGAGTCGATATCCTGAGCCTCTTCTGGCCAACATATCCTTATCCTGGAACAAAAGCCTTGAGTTAACAGATGACATCCAGATATCCTTTGAGTATGGTCGGCCCACAATAATGGTGCTAGACAAGTCTCTGAATTATGGACGAACCTGGCAGCCTTACCAGTACTACGCTGACGACTGCATGGAGGCTTTTGGGATGTTGGCAAAAAGAGTGCAGGATCTTTCGGCCACCAACGTGACCAGAGTTATATGTACCGAGCAATACTCTCGCTGGGTTGGTTCCAAGAATGAGAAGAACGTGCGCTTTGAAGTCCGGGAGCGCTTCGCCATATTTGCTGGGGCAAAACTGCAGAACATGGACAACTTGTACACACGCATGGAAAGTATGAAAGGTCTCCGAGACTTTTTCACCTTCACAAACCTACGACTTCGGCTGCTGAGACCGGCGCTCGGAGGAACATACGTACAGAAAGACAACCTTCTCAAGTATTTCTACGCCATCTCCAACATCGACATACCAGCAAGGTGTAAGTGTAACCTCCACGCCGGCCAGTGCTCCCTCCGTGATGGGACGCTTCAGTGCGACTGCGAGCACAACACCACGGGACAAGACTGTTTGGTCTGCGAAAGAGGATTTAAAGCCAAGTCCTGGAAGCCCGGCTCGTACCTGCCCACCCCGAACGGCTCCCCGAACATTT
>TCONS_00069616
ATGCTCTCACAGGCGCTCCTGCTTTTACAGTGCATTATTCTGACTCTCGGCCAGTACGATATCTGTAAGTCGCTGGTCAGCACAGACGATGGACCGACATGGGAATATTACGCTTGCCAGCCCAAACCCATGTCCATGAAGGAGTACATGCAGATTAGAGTGGAGCCTCCCGATATCACATGTGGAAACCCACCGGAGAGATACTGCACTCTGGAAAACCCATACCTGTGTAGTGACGAATGCGATGCCTCCACCAAAGAACTGGCTCATCCTCCAGAGCTGATGCAAGACAGCGAGCGAACCGGACTCATCACCTACTGGCAGACGGTAACATGGAGTCGATATCCTGAGCCTCTTCTGGCCAACATATCCTTATCCTGGAACAAAAGCCTTGAGTTAACAGATGACATCCAGATATCCTTTGAGTATGGTCGGCCCACAATAATGGTGCTAGACAAGTCTCTGAATTATGGACGAACCTGGCAGCCTTACCAGTACTACGCTGACGACTGCATGGAGGCTTTTGGGATGTTGGCAAAAAGAGTGCAGGATCTTTCGGCCACCAACGTGACCAGAGTTATATGTACCGAGCAATACTCTCGCTGGGTTGGTTCCAAGAATGAGAAGAACGTGCGCTTTGAAGTCCGGGAGCGCTTCGCCATATTTGCTGGGGCAAAACTGCAGAACATGGACAACTTGTACACACGCATGGAAAGTATGAAAGGTCTCCGAGACTTTTTCACCTTCACAAACCTACGACTTCGGCTGCTGAGACCGGCGCTCGGAGGAACATACGTACAGAAAGACAACCTTCTCAAGTATTTCTACGCCATCTCCAACATCGACATACCAGCAAGGTGTAAGTGTAACCTCCACGCCGGCCAGTGCTCCCTCCGTGATGGGACGCTTCAGTGCGACTGCGAGCACAACACCACGGGACAAGACTGTTTGGTCTGCGAAAGAGGATTTAAAGCCAAGTCCTGGAAGCCCGGCTCGTACCTGCCCACCCCGAACGGCTCCCCGAACATTTattttcacgcacaactatcactagggtttaaagagaatggtctgaaaaagagaaaatatccagccttgccagaggtcagaggagaatggccagactga
>TCONS_00069617
ATGCTCTCACAGGCGCTCCTGCTTTTACAGTGCATTATTCTGACTCTCGGCCAGTACGATATCTGTAAGTCGCTGGTCAGCACAGACGATGGACCGACATGGGAATATTACGCTTGCCAGCCCAAACCCATGTCCATGAAGGAGTACATGCAGATTAGAGTGGAGCCTCCCGATATCACATGTGGAAACCCACCGGAGAGATACTGCACTCTGGAAAACCCATACCTGTGTAGTGACGAATGCGATGCCTCCACCAAAGAACTGGCTCATCCTCCAGAGCTGATGCAAGACAGCGAGCGAACCGGACTCATCACCTACTGGCAGACGGTAACATGGAGTCGATATCCTGAGCCTCTTCTGGCCAACATATCCTTATCCTGGAACAAAAGCCTTGAGTTAACAGATGACATCCAGATATCCTTTGAGTATGGTCGGCCCACAATAATGGTGCTAGACAAGTCTCTGAATTATGGACGAACCTGGCAGCCTTACCAGTACTACGCTGACGACTGCATGGAGGCTTTTGGGATGTTGGCAAAAAGAGTGCAGGATCTTTCGGCCACCAACGTGACCAGAGTTATATGTACCGAGCAATACTCTCGCTGGGTTGGTTCCAAGAATGAGAAGAACGTGCGCTTTGAAGTCCGGGAGCGCTTCGCCATATTTGCTGGGGCAAAACTGCAGAACATGGACAACTTGTACACACGCATGGAAAGTATGAAAGGTCTCCGAGACTTTTTCACCTTCACAAACCTACGACTTCGGCTGCTGAGACCGGCGCTCGGAGGAACATACGTACAGAAAGACAACCTTCTCAAGTATTTCTACGCCATCTCCAACATCGACATACCAGCAAGGTGTAAGTGTAACCTCCACGCCGGCCAGTGCTCCCTCCGTGATGGGACGCTTCAGTGCGACTGCGAGCACAACACCACGGGACAAGACTGTTTGGTCTGCGAAAGAGGATTTAAAGCCAAGTCCTGGAAGCCCGGCTCGTACCTGCCCACCCCGAACGGCTCCCCGAACATTTGTACGAATGAGGCACCTGCTgaaTGCAACGGTCACTCAAATCGCTGCAGTTACATTGATTTCATCAACATTGTGACTTGTGTGAGCTGCAAACACAACACTCGAGGGCAGAACTGTCAGCACTGCCGCCTCGGATACTTCCGGAATGCTTCGGCCGAGTTGGACGATGAGAATGTTTGCATAGAGTGTAACTGTAATCAGCTGGGCTCCATACACGCCCGCTGCAATGACACAGGCTTCTGCCAGTGTCGAGACGGCACCGCGGGCCAGAAGTGTGAGGACTGTCTGCCTGGATATACCTGGAAGCAAGGCTGCGTGCCAAACGTGTGCGACGACGAGTTCCTCTTGTGTCAGAATGGCGGCTCCTGCATTCAGAATCAGAAGTGTGTGTGTCCGCCCAACTTCCGGGGTGTTTTGTGTGAGCAGCCGCGCTGCCAGGGTGAGAAAGGGTGCATCGACGGCGCATCGGCCTGCTACCTCAGCACACTGACGCTGCTGCTCTGCCTTTTAGCCAACAGCCTGCTTAAAGCCAGCGCCTAG
>TCONS_00069618
ACTGCGAGTGCAACGGTCACTCAAATCGCTGCAGTTACATTGATTTCATCAACATTGTGACTTGTGTGAGCTGCAAACACAACACTCGAGGGCAGAACTGTCAGCACTGCCGCCTCGGATACTTCCGGAATGCTTCGGCCGAGTTGGACGATGAGAATGTTTGCATAGAGTGTAACTGTAATCAGCTGGGCTCCATACACGCCCGCTGCAATGACACAGGCTTCTGCCAGTGTCGAGACGGCACCGCGGGCCAGAAGTGTGAGGACTGTCTGCCTGGATATACCTGGAAGCAAGGCTGCCAAACGTGTGCGACGACGAGTTCCTCTTGTGTCAGAATGGCGGCTCCTGCATTCAGAATCAGAAGTGTGTGTGTCCGCCCAACTTCCGGGGTGTTTTGTGTGAGCAGCCGCGCTGCCAGGGTGAGAAAGGGTGCATCGACGGCGCATCGGCCTGCTACCTCAGCACACTGACGCTGCTGCTCTGCCTTTTAGCCAACAGCCTGCTTAAAGCCAGCGCCTAGAAGCCCATCTTAGTCCTGATATCAATCCTAGTCTACTCTACGCAGGCCAAAGGGCTGAACCCTGCGGacggagagagaaagaaaaagagagagaaagagtggcCTGAACCCCGTACGGAACCAGCCTCAAGGTGCTGACATCTTTTTTGGAAAGGCGGGTGGTTCAGCTGAAGTCAAAAAAGCCT

Function

symbol description
ntng2a Predicted to be involved in several processes, including basement membrane assembly; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be part of laminin complex. Orthologous to human NTNG2 (netrin G2).

GO:

id name namespace
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0016477 cell migration biological_process
GO:0070831 basement membrane assembly biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0043256 laminin complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-186 Predicted to be involved in several processes, including basement membrane assembly; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be part of laminin complex. Orthologous to human NTNG2 (netrin G2).

Ensembl:

ensembl_id ENSDARG00000077367

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069615 False 1031 mRNA 0.51 3 11993150 12065918
TCONS_00069616 False 1128 mRNA 0.51 4 11993151 12070546
TCONS_00069617 False 1569 mRNA 0.53 6 11993151 12111276
TCONS_00069618 True 705 mRNA 0.54 3 12100345 12111461

Neighbor

gene id symbol gene type direction distance location
XLOC_035486 CR933523.1 coding upstream 133006 11860028 ~ 11860144 (+)
XLOC_035485 NA coding upstream 180986 11794658 ~ 11812164 (+)
XLOC_035484 atp2a2a coding upstream 248156 11687254 ~ 11744994 (+)
XLOC_035483 ift81 coding upstream 311591 11642070 ~ 11681559 (+)
XLOC_035482 NA coding upstream 419678 11567232 ~ 11573472 (+)
XLOC_035488 endog coding downstream 6636 12118097 ~ 12122228 (+)
XLOC_035489 NA coding downstream 654569 12766030 ~ 13063138 (+)
XLOC_035490 KIF2A coding downstream 813924 12925385 ~ 12948930 (+)
XLOC_035491 cept1a coding downstream 839694 12951155 ~ 12969237 (+)
XLOC_035492 dram2a coding downstream 864502 12975963 ~ 12989137 (+)
XLOC_035479 NA non-coding upstream 673447 11319434 ~ 11319703 (+)
XLOC_035478 NA non-coding upstream 880583 11105506 ~ 11112567 (+)
XLOC_035498 NA non-coding downstream 1407061 13518522 ~ 13597892 (+)
XLOC_035499 NA non-coding downstream 1575643 13687104 ~ 13692006 (+)
XLOC_035502 NA non-coding downstream 1644552 13756013 ~ 13760915 (+)
XLOC_035503 NA non-coding downstream 1683520 13794981 ~ 13799369 (+)

Expression


Co-expression Network