XLOC_035488 (endog)


Basic Information

Item Value
gene id XLOC_035488
gene name endog
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 12118097 ~ 12122228 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069619
GATACGTCCTACGCGCTAGTTTAGCCGGTAGGACAAACTCACATGGGTCATGTAAAAAATATCGGAATAACTACAGCACGTCCACTTTATCTTAACATATTTATTGCCCGTAAACGATGTATCGCGTTTTCTGCTCGCGGTGGGTTTTACCCGGTTTGTCACTGACAGCTGGCATTGGCATCGGTGCCACACTGACAGCAGCGGGTGACAGGCGTAATAACAACAGGAAAGCGAGTTTGCTGGATCGCGTGCCGGTCATCCCGATACCAAGCGTCGACGCGGCGTCAGAGATCAGCCCGTACCAGCCGGGACAGGTCTCTGTAAACCGGTCTACAGCTGCGATGAAATACGGCTTTCCTTCCCTGTCCAACATCAAAAGCAGAGAGTCTTACGTGACCTCCTACGACCCTAGAAACAGGACGGCAGCCTGGGTCATCGAGCAGCTGAACGCAGAGACGGTCACCGGAAGCTCGGACAGAAAGTACTGCGAGTTCAAAGAGGACGAGTCGGTTCATGTTTACCACAGGTCCAGCAATGCGGATTATAAGGGGAGTGGATTTGACAGGGGTCACTTGGCAGCAGCAGCCAATCACAAGTGGAGCCAGAAAGCCATGGATGAAACATTTTACCTGAGCAATGTGTCTCCACAGAATCCTAATCTTAACCAGAATGCCTGGAATAACTTGGAGAAGTATTGTCGCTCTCTCACCAAGCATTACCAGAATGTCTTTGTATGCACTGGACCACTCTACTTACCACGACAGGAAGCTGATGGGAAGATGTACGTGAAATATCAGGTTTTGGGAAAGAATCATGTAGCGGTGCCGACTCACTTCTTTAAGGTGGTGATTCTGGAGAAGCCGAGAGGAGATGTGGAGCTGCGCTCCTATGTGATGCCCAACATGCCGGTCGATGAGAAGATTCCACTGGAGCGCTTCCTGGTTCCTATTGAGAGCATTGAGAGAGCGTCAGGACTGCTGTTCGTACCAAACATCATGAAGAGGACCAGCAGTCTGAAAGCCATAACAGCAGGATGAGTTTACAGTCAATGCTGAGGGCGAAAGTAAAATCCATCAAAAATTCATAACAAAAGTTTTAAGGAAAACTACTGAGAAAACACATAGAAGTCAATGTATAGTGATAATGACTGTCATATCACTGTCTGATGTTGTATTGTTTAGTAGAGATTttgtattattactgttgttagatgTCAGCCATTAACAGGGATTttataatataacaattaatTTATGCCGAGCCAAAACTGTACAGAAGTAGATTTTAATACAGATAGTGATATTTGAATCTGTACTACTAGAAATAAAAACTGTGCAATCTTTAAATCA

Function

symbol description
endog Predicted to enable endoribonuclease activity and single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in apoptotic DNA fragmentation. Predicted to be active in mitochondrial inner membrane and nucleus. Orthologous to human ENDOG (endonuclease G).

GO:

id name namespace
GO:0006309 apoptotic DNA fragmentation biological_process
GO:0000737 DNA catabolic process, endonucleolytic biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004521 endoribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko04210 Apoptosis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050522-402 Predicted to enable endoribonuclease activity and single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in apoptotic DNA fragmentation. Predicted to be active in mitochondrial inner membrane and nucleus. Orthologous to human ENDOG (endonuclease G).

Ensembl:

ensembl_id ENSDARG00000058865

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069619 True 1349 mRNA 0.46 3 12118097 12122228

Neighbor

gene id symbol gene type direction distance location
XLOC_035487 ntng2a coding upstream 6636 11993150 ~ 12111461 (+)
XLOC_035486 CR933523.1 coding upstream 257953 11860028 ~ 11860144 (+)
XLOC_035485 NA coding upstream 305933 11794658 ~ 11812164 (+)
XLOC_035484 atp2a2a coding upstream 373103 11687254 ~ 11744994 (+)
XLOC_035483 ift81 coding upstream 436538 11642070 ~ 11681559 (+)
XLOC_035489 NA coding downstream 643802 12766030 ~ 13063138 (+)
XLOC_035490 KIF2A coding downstream 803157 12925385 ~ 12948930 (+)
XLOC_035491 cept1a coding downstream 828927 12951155 ~ 12969237 (+)
XLOC_035492 dram2a coding downstream 853735 12975963 ~ 12989137 (+)
XLOC_035493 sap30bp coding downstream 942522 13064750 ~ 13098192 (+)
XLOC_035482 NA non-coding upstream 544625 11567232 ~ 11573472 (+)
XLOC_035479 NA non-coding upstream 798394 11319434 ~ 11319703 (+)
XLOC_035478 NA non-coding upstream 1005530 11105506 ~ 11112567 (+)
XLOC_035498 NA non-coding downstream 1396294 13518522 ~ 13597892 (+)
XLOC_035499 NA non-coding downstream 1564876 13687104 ~ 13692006 (+)
XLOC_035502 NA non-coding downstream 1633785 13756013 ~ 13760915 (+)
XLOC_035503 NA non-coding downstream 1672753 13794981 ~ 13799369 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_07128701_07132022 ENDOG coding CI01000010 null 7128662 ~ 7132068 (-)