XLOC_035679


Basic Information

Item Value
gene id XLOC_035679
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 24417869 ~ 24692136 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072199
ACCACTGAACAGCAGGTTGTGGCCCCTGAAGATCTGGAAGCAGTCGCTCATTCAGCGGTCACTGCTATTGCAGATGCAGCAATGACCCGGTTTACACTGAAGCCACACCTGAACAACTGGAACAACTGCAAGAGCAGGGCATCCAGTATGATGTCATCACTTTTATTGAGGAGTAGAAACACGacacacacattatttattaacaacatcaacacacacacacggacagacAGAAGAATATCTGAAGCTCATCTCAGCTCCAAATGAGCATCACAAACTGCGCTGATCATAAGTAACACAAACTTCTTCCACAATCATCAGTCATTTATAAGGTGAATGTACAGTTAGATCCTCTCAAAATATGATTTATGCCTTTGTAAATATTGAAAGAAATGTATCTTTAGCCTTGAAAAAGAAATATGTATAGAGAATCCTGTATTTAAGAAGAATAATGGACATGTCTCTGTGGATGCTGCTTTAATGACAGTCTGTATATAACGGTAGGCTGGAGGATTGACGTCATATTGCTATGAAACAGTTCCTGGCTGTAGCTAAAATTCTTACAAAGAAGGTTTTGATCATTTGCTGTTTCATTTTTAGCTTCTTCAGTTTTACAGATATGTCTTTCTTTAAACATGGCTACAGACCGGAACTTTAAATGCAAACCAAATAAGTCAAATCCTCTTTATCTGATTCTAACACTGATTTTCTTGCATTAGTTGTGCTATAATATTGTACAATTCTGGTTTTACAAAGCTGTTGTCTGCTGcatatgatttaataatatttatactcgTGTACATATTGATTTTTGTTCCTATTCAGTGCCTTATGCATGTATTTTAAGTTGCGTCTGAAAGTTCAGATCAGTTTTTATCtttggtttgttttgtacattCACTACCAAGAATCCATCaaactttctatttttaaaaatgatgttcAATTTTAAAGCTACTAAGACAAAGACATCTGAACTTCACTATTCAGCTAGGGTCATCTACAATTATACCTTTAATTCAGTCAGAAGTCTTGATGCTCAGCTGTCCTTCAGTGCTCACATAACCTGCATGATTGTGCAAGCTTTGTTTTCTTTACACAAAATTagaaggatcagacactttgtaacAGAGCAGGCTGCGTAACTTCTTGTCCAAGCACTTGTGATTTGTATATTAGGCTACTGCAATGTTCTCCAGGCTGAACTTCCATCATCCGCAGTGAAACCTCTTCAGATGATCTAAAATGCTGCAGCTCGTCTGGTCTGAGCTTTATTTATCCCAATAGAGTCCTCTACACACATCAATATCACAGGAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072199 True 1317 lncRNA 0.37 4 24417869 24692136

Neighbor

gene id symbol gene type direction distance location
XLOC_035678 NA coding upstream 67625 24348481 ~ 24350244 (+)
XLOC_035676 mmp9 coding upstream 121922 24281512 ~ 24295947 (+)
XLOC_035675 CT025875.1 coding upstream 266617 24110045 ~ 24151252 (+)
XLOC_035672 cpne5a coding upstream 341025 23916647 ~ 24076844 (+)
XLOC_035682 BX324132.2 coding downstream 14415 24706551 ~ 24711139 (+)
XLOC_035683 NA coding downstream 24039 24716175 ~ 24724119 (+)
XLOC_035684 lamtor5 coding downstream 37984 24730120 ~ 24744290 (+)
XLOC_035685 slc16a4 coding downstream 52905 24745041 ~ 24779395 (+)
XLOC_035686 NA coding downstream 95729 24787865 ~ 24791427 (+)
XLOC_035674 AL928881.1 non-coding upstream 353574 24064210 ~ 24064295 (+)
XLOC_035673 CT573357.1 non-coding upstream 497153 23917588 ~ 23920716 (+)
XLOC_035671 NA non-coding upstream 510496 23898723 ~ 23907373 (+)
XLOC_035666 AL929282.1 non-coding upstream 636475 23781005 ~ 23781394 (+)
XLOC_035688 BX470135.1 non-coding downstream 287784 24979920 ~ 24980036 (+)
XLOC_035698 CR847543.2 non-coding downstream 647381 25339517 ~ 25341488 (+)

Expression


Co-expression Network