XLOC_036052 (stambpb)


Basic Information

Item Value
gene id XLOC_036052
gene name stambpb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52530889 ~ 52547957 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070574
TGTCAAACCGGAAGAGGAAGTAAGTGAGAGATTAACGCGAAAGGGGATGGAGACACAACACAGACCCACAGAGAAACACTGATATGGACGAGTTTCACAGCTAATGTGActgaaagctgaaaatctgtctTCATTAGCACGGTTTCCCCGCTACCTTCACATTGACCCTCATGATGCTGGATCACGCGGACGTGAGTTTGAGCCCAGAGGAGCGGGTTCGAGCCCTCACCAAGAAGGGTGGCGCGGTGGAGATGAATGAAAGCGTGCCACTGCGCAGGTATTTCCGCTCGGGCATGGAGATGATCCGCATGGCACATGTTTACGCTGAGGAGGGAAACACAGAACACGCCTTCGTCctctacaacaaatacatcacGCTTTTCATTGAGAAACTCCCCAAACATCCAGAATATAAGCTGTCTAATATTCCTGAGAAGAAGGAGATACTGAGGAAGCTGAAGGACACGGCTTTCCCTCAAGCAGAGCAGCTGAAGAAGCTCCTGCTCAGGAGATATGAGAGAGAGCATGCAGACTACATCAGCAAGAAGcgtgTGGAGGCTGAGGCTGTGGAGCGCGAGCTGTCCCGTCAGCGTGAGCTGGATGCGGAGCGTCGACGTGTGGCAGAGCTGCAGAGGAGACAGCAGGAGCAGGAGCAGTTCAGCATCTTCGAGGAGATGATCCAGCAGCAGGAGCGCCATCGCCATCCGCACACACACCACACTCCAGCAGCTCCGCAGACCGACACACCGCTCATCCCGGGCATCCAGGGTCCGCCCGTGCCATTCCCAGAATCCCCAACTCCACCTCAGAGCCCGCAGCAGccctcagccaatcacagcactCCATCAGCACCGGCTCCGCCCACTTTCGACCGTTCGCTCAAACCCAGTCACCTCACTACACTGATCGATGGTTTACGGCAGATCGCTGTTCCCGCGGAGCTGTGTGGCAAATTTCTGCGGCTGGCCAATAACAACACTATTAGGGCAGTGGAGACCTGCGGGATCCTCTGTGGGACACTGaacAGGAACGCCTTCACTGTGACACACGTGGTGGTCCCGAAGCAGTGTGGAGGTCCAGATTACTGTGACACAGAGAACGAAGAGGAGCTGTTTCTGGTGCAGGACCAGTACAACCTCATCACTCTGGGCTGGATACACACTCACCCGACACAGACGGCGTTTCTGTCCAGCGTGGATCTGCACACACACTGCTCCTATCAGATGATGCTGCCCGAGTCCATCGCCATCGTCTGCTCGCCCAAATTCAACCAGACGGGTTACTTCAGACTGACAGACTACGGTATGGAGGAGATCTCCACCTGCGCTCAGAAAGGCTTTCACCCTCATCCCAAAGACCCTCCTCTGTTCACGGGCGGCAGTCACATCATCATCACAGAAGATACGGTGTCCATGCTGGACCTGCGGTGATCCTCTCCATGACACAGACAGACTCTGATCCTCCAcaggcacttttttttttgtgagatacGAACACTAAACGCCAGAGCTCAGGAACGCAAACACCTCCGCAGGCCTGCAGGATCCACAAGGACAGGTGTATTTCTGTGTCATACACACGTCATCCGTACACACACCATCACAGCAGGGGCTTTCAAAAGGGTTCGTTCACGCAAAAATCAGAATTATGCAATGATTTACCCAGCAGTTATTCAAAACATGATCTATTCTagctctacactgtaaaaatatcagtaaattagcagtttttttttttagtattttgtgattcatgttttcagccaatcacagccaTTTCCTTGAGCACTGGTAAATACtgtggcaaatcagcgctgtttaagaacgcgcttAAATGCTAGCGATTTTAAAACTTCATAACAGGGACAACACTATACACAACACAAGGATGTGCTACGGAGGACTTCATTGTTTAatcgctcaccgggttacataggctgccGCAGGGAAGCGTCCCCACGGTGTTTGCCTGCTGCCATgtgctgaagcctaggaggacactctTATAGAGactgtgatgttgtttgatgcctcaTCTGCTTTTAATCGTTTAGATTAAACTGAACCGagtgatattaaagtgatgtttaaacc
>TCONS_00070575
ACCGGAAGAGGAAGTAAGTGAGAGATTAACGCGAAAGGGGATGGAGACACAACACAGACCCACAGAGAAACACTGATATGGACGAGTTTCACAGCTAATGTGActgaaagctgaaaatctgtctTCATTAGCACGGTTTCCCCGCTACCTTCACATTGACCCTCATGATGCTGGATCACGCGGACGTGAGTTTGAGCCCAGAGGAGCGGGTTCGAGCCCTCACCAAGAAGGGTGGCGCGGTGGAGATGAATGAAAGCGTGCCACTGCGCAGGTATTTCCGCTCGGGCATGGAGATGATCCGCATGGCACATGTTTACGCTGAGGAGGGAAACACAGAACACGCCTTCGTCctctacaacaaatacatcacGCTTTTCATTGAGAAACTCCCCAAACATCCAGAATATAAGCTGTCTAATATTCCTGAGAAGAAGGAGATACTGAGGAAGCTGAAGGACACGGCTTTCCCTCAAGCAGAGCAGCTGAAGAAGCTCCTGCTCAGGAGATATGAGAGAGAGCATGCAGACTACATCAGCAAGAAGcgtgTGGAGGCTGAGGCTGTGGAGCGCGAGCTGTCCCGTCAGCGTGAGCTGGATGCGGAGCGTCGACGTGTGGCAGAGCTGCAGAGGAGACAGCAGGAGCAGGAGCAGTTCAGCATCTTCGAGGAGATGATCCAGCAGCAGGAGCGCCATCGCCATCCGCACACACACCACACTCCAGCAGCTCCGCAGACCGACACACCGCTCATCCCGGGCATCCAGGGTCCGCCCGTGCCATTCCCAGAATCCCCAACTCCACCTCAGAGCCCGCAGCAGccctcagccaatcacagcactCCATCAGCACCGGCTCCGCCCACTTTCGACCGTTCGCTCAAACCCAGTCACCTCAGTAAGACTACACTGATCGATGGTTTACGGCAGATCGCTGTTCCCGCGGAGCTGTGTGGCAAATTTCTGCGGCTGGCCAATAACAACACTATTAGGGCAGTGGAGACCTGCGGGATCCTCTGTGGGACACTGaacAGGAACGCCTTCACTGTGACACACGTGGTGGTCCCGAAGCAGTGTGGAGGTCCAGATTACTGTGACACAGAGAACGAAGAGGAGCTGTTTCTGGTGCAGGACCAGTACAACCTCATCACTCTGGGCTGGATACACACTCACCCGACACAGACGGCGTTTCTGTCCAGCGTGGATCTGCACACACACTGCTCCTATCAGATGATGCTGCCCGAGTCCATCGCCATCGTCTGCTCGCCCAAATTCAACCAGACGGGTTACTTCAGACTGACAGACTACGGTATGGAGGAGATCTCCACCTGCGCTCAGAAAGGCTTTCACCCTCATCCCAAAGACCCTCCTCTGTTCACGGGCGGCAGTCACATCATCATCACAGAAGATACGGTGTCCATGCTGGACCTGCGGTGATCCTCTCCATGACACAGACAGACTCTGATCCTCCAcaggcacttttttttttgtgagatacGAACACTAAACGCCAGAGCTCAGGAACGCAAACACCTCCGCAGGCCTGCAGGATCCACAAGGACAGGTGTATTTCTGTGTCATACACACGTCATCCGTACACACACCATCACAGCAGGGGCTTTCAAAAGGGTTCGTTCACGCAAAAATCAGAATTATGCAATGATTTACCCAGCAGTTATTCAAAACATGATCTATTCTagctctacactgtaaaaatatcagtaaattagcagtttttttttttagtattttgtgattcatgttttcagccaatcacagccaTTTCCTTGAGCACTGGTAAATACtgtggcaaatcagcgctgtttaagaacgcgcttAAATGCTAGCGATTTTAAAACTTCATAACAGGGACAACACTATACACAACACAAGGATGTGCTACGGAGGACTTCATTGTTTAatcgctcaccgggttacataggctgccGCAGGGAAGCGTCCCCACGGTGTTTGCCTGCTGCCATgtgctgaagcctaggaggacactctTATAGAGactgtgatgttgtttgatgcctcaTCTGCTTTTAATCGTTTAGATTAAACTGAACCGagtgatattaaagtgatgtttaaaccATATCTGAGTTTTGAAATTGCggcatttcccagagatgggttgcagcttagtgtgaactaacccttttgaGTGATGAGCATCATCTTCAGTGAGCGCCGAACGCCAACATTTCTGAAATGTCTTCTgaaatgctgctttttttttgGCGGGGTCACTTTGTATATTAGTTTATGATAATGTTGGTTCTTCCTGTCATGATTGAGTTGTTTTAAGGGGCCGTTCACACTGGATCTGTTTTGCGATGTAGACGGtgtattgaaataattaaaaaaaaagtcatttattttgaAGCTCCTTTTA
>TCONS_00070576
GGAGACACAACACAGACCCACAGAGAAACACTGATATGGACGAGTTTCACAGCTAATGTGActgaaagctgaaaatctgtctTCATTAGCACGGCTTTTCATTGAGAAACTCCCCAAACATCCAGAATATAAGCTGTCTAATATTCCTGAGAAGAAGGAGATACTGAGGAAGCTGAAGGACACGGCTTTCCCTCAAGCAGAGCAGCTGAAGAAGCTCCTGCTCAGGAGATATGAGAGAGAGCATGCAGACTACATCAGCAAGAAGcgtgTGGAGGCTGAGGCTGTGGAGCGCGAGCTGTCCCGTCAGCGTGAGCTGGATGCGGAGCGTCGACGTGTGGCAGAGCTGCAGAGGAGACAGCAGGAGCAGGAGCAGTTCAGCATCTTCGAGGAGATGATCCAGCAGCAGGAGCGCCATCGCCATCCGCACACACACCACACTCCAGCAGCTCCGCAGACCGACACACCGCTCATCCCGGGCATCCAGGGTCCGCCCGTGCCATTCCCAGAATCCCCAACTCCACCTCAGAGCCCGCAGCAGccctcagccaatcacagcactCCATCAGCACCGGCTCCGCCCACTTTCGACCGTTCGCTCAAACCCAGTCACCTCACTACACTGATCGATGGTTTACGGCAGATCGCTGTTCCCGCGGAGCTGTGTGGCAAATTTCTGCGGCTGGCCAATAACACACTGCTCCTATCAGATGATGCTGCCCGAGTCCATCGCCATCGTCTGCTCGCCCAAATTCAAC
>TCONS_00070577
GAGACACAACACAGACCCACAGAGAAACACTGATATGGACGAGTTTCACAGCTAATGTGActgaaagctgaaaatctgtctTCATTAGCACGGTTTCCCCGCTACCTTCACATTGACCCTCATGATGCTGGATCACGCGGACGTGAGTTTGAGCCCAGAGGAGCGGGTTCGAGCCCTCACCAAGAAGGGTGGCGCGGTGGAGATGAATGAAAGCGTGCCACTGCGCAGGTATTTCCGCTCGGGCATGGAGATGATCCGCATGGCACATGTTTACGCTGAGGAGGGAAACACAGAACACGCCTTCGTCctctacaacaaatacatcacGTAAGAAGAGCTCCGAAAAACTGCTCTGCTCTTTACTTATACTGATGAAGACACAATTACTATGATCTTCAAACATTTCCCAACATATCCACTTAAAATAGTACTGTAgtagtttatagtaaatactaatgCTTTTGATCCATTACATGGTATTTTACTGTATTGTGTttacaacattttaattaaaaaatactatagtactttatagtaaatactactgTTTATGAACCATACaattgtattatactgtatataatatggTTTTTACAACACTTTAATGAAAAAGTCCTATAGTAGATTATTTTGATTCATATTTCAGTGTAAATACcgtatttaatttagtattttcaaCACTTTGTTAATGAGTGCTCCAACATACTGTAGTGTTAACTTTAGTGAACTGTAATA
>TCONS_00070578
ACACAACACAGACCCACAGAGAAACACTGATATGGACGAGTTTCACAGCTAATGTGActgaaagctgaaaatctgtctTCATTAGCACGGTTTCCCCGCTACCTTCACATTGACCCTCATGATGCTGGATCACGCGGACGTGAGTTTGAGCCCAGAGGAGCGGGTTCGAGCCCTCACCAAGAAGGGTGGCGCGGTGGAGATGAATGAAAGCGTGCCACTGCGCAGGTATTTCCGCTCGGGCATGGAGATGATCCGCATGGCACATGTTTACGCTGAGGAGGGAAACACAGAACACGCCTTCGTCctctacaacaaatacatcacGCTTTTCATTGAGAAACTCCCCAAACATCCAGAATATAAGCTGTCTAATATTCCTGAGAAGAAGGAGATACTGAGGGTAATGTAGAGCAGTGAAGTCTGGATCTCCGCTGGTCGTCTGAGTGTGTTGTTTATCATCGTTTGCTGTTTCTCCTCGCACACACAGAAGCTG

Function

symbol description
stambpb Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cleavage furrow and endosome.

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016579 protein deubiquitination biological_process
GO:0005768 endosome cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0016020 membrane cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051127-31 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cleavage furrow and endosome.

Ensembl:

ensembl_id ENSDARG00000086906

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070574 False 2093 mRNA 0.51 10 52530889 52547656
TCONS_00070575 False 2394 mRNA 0.50 10 52530895 52547957
TCONS_00070576 False 755 processed_transcript 0.56 6 52530937 52543392
TCONS_00070577 False 735 lncRNA 0.38 2 52530938 52534598
TCONS_00070578 True 493 mRNA 0.49 3 52530941 52536439

Neighbor

gene id symbol gene type direction distance location
XLOC_036051 si:ch1073-392o20.2 coding upstream 383 52515188 ~ 52530506 (+)
XLOC_036050 RNF122 coding upstream 20572 52491436 ~ 52510317 (+)
XLOC_036049 FO704661.1 coding upstream 40415 52479026 ~ 52490474 (+)
XLOC_036048 zgc:77112 coding upstream 83788 52442622 ~ 52447101 (+)
XLOC_036047 gins4 coding upstream 99367 52415614 ~ 52431522 (+)
XLOC_036053 NA coding downstream 49431 52597388 ~ 52604066 (+)
XLOC_036054 ccn1l2 coding downstream 71408 52619365 ~ 52631064 (+)
XLOC_036055 si:dkey-90l8.3 coding downstream 89550 52637507 ~ 52647790 (+)
XLOC_036056 NA coding downstream 103194 52651151 ~ 52652449 (+)
XLOC_036057 bcl2l16 coding downstream 153854 52701811 ~ 52716316 (+)
XLOC_036043 FQ790367.1 non-coding upstream 367925 52161861 ~ 52162964 (+)
XLOC_036041 NA non-coding upstream 752298 51775422 ~ 51778591 (+)
XLOC_036039 NA non-coding upstream 944186 51581729 ~ 51586703 (+)
XLOC_036038 NA non-coding upstream 1365040 51160606 ~ 51165849 (+)
XLOC_036035 CR855300.1 non-coding upstream 1562890 50966806 ~ 50967999 (+)
XLOC_036058 NA non-coding downstream 219498 52767455 ~ 52780637 (+)
XLOC_036060 NA non-coding downstream 331468 52879425 ~ 52887683 (+)
XLOC_036061 NA non-coding downstream 449583 52997540 ~ 53028669 (+)

Expression


Co-expression Network