RNA id: TCONS_00070574


Basic Information

Item Value
RNA id TCONS_00070574
length 2093
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_036052
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52530889 ~ 52547957 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCAAACCGGAAGAGGAAGTAAGTGAGAGATTAACGCGAAAGGGGATGGAGACACAACACAGACCCACAGAGAAACACTGATATGGACGAGTTTCACAGCTAATGTGActgaaagctgaaaatctgtctTCATTAGCACGGTTTCCCCGCTACCTTCACATTGACCCTCATGATGCTGGATCACGCGGACGTGAGTTTGAGCCCAGAGGAGCGGGTTCGAGCCCTCACCAAGAAGGGTGGCGCGGTGGAGATGAATGAAAGCGTGCCACTGCGCAGGTATTTCCGCTCGGGCATGGAGATGATCCGCATGGCACATGTTTACGCTGAGGAGGGAAACACAGAACACGCCTTCGTCctctacaacaaatacatcacGCTTTTCATTGAGAAACTCCCCAAACATCCAGAATATAAGCTGTCTAATATTCCTGAGAAGAAGGAGATACTGAGGAAGCTGAAGGACACGGCTTTCCCTCAAGCAGAGCAGCTGAAGAAGCTCCTGCTCAGGAGATATGAGAGAGAGCATGCAGACTACATCAGCAAGAAGcgtgTGGAGGCTGAGGCTGTGGAGCGCGAGCTGTCCCGTCAGCGTGAGCTGGATGCGGAGCGTCGACGTGTGGCAGAGCTGCAGAGGAGACAGCAGGAGCAGGAGCAGTTCAGCATCTTCGAGGAGATGATCCAGCAGCAGGAGCGCCATCGCCATCCGCACACACACCACACTCCAGCAGCTCCGCAGACCGACACACCGCTCATCCCGGGCATCCAGGGTCCGCCCGTGCCATTCCCAGAATCCCCAACTCCACCTCAGAGCCCGCAGCAGccctcagccaatcacagcactCCATCAGCACCGGCTCCGCCCACTTTCGACCGTTCGCTCAAACCCAGTCACCTCACTACACTGATCGATGGTTTACGGCAGATCGCTGTTCCCGCGGAGCTGTGTGGCAAATTTCTGCGGCTGGCCAATAACAACACTATTAGGGCAGTGGAGACCTGCGGGATCCTCTGTGGGACACTGaacAGGAACGCCTTCACTGTGACACACGTGGTGGTCCCGAAGCAGTGTGGAGGTCCAGATTACTGTGACACAGAGAACGAAGAGGAGCTGTTTCTGGTGCAGGACCAGTACAACCTCATCACTCTGGGCTGGATACACACTCACCCGACACAGACGGCGTTTCTGTCCAGCGTGGATCTGCACACACACTGCTCCTATCAGATGATGCTGCCCGAGTCCATCGCCATCGTCTGCTCGCCCAAATTCAACCAGACGGGTTACTTCAGACTGACAGACTACGGTATGGAGGAGATCTCCACCTGCGCTCAGAAAGGCTTTCACCCTCATCCCAAAGACCCTCCTCTGTTCACGGGCGGCAGTCACATCATCATCACAGAAGATACGGTGTCCATGCTGGACCTGCGGTGATCCTCTCCATGACACAGACAGACTCTGATCCTCCAcaggcacttttttttttgtgagatacGAACACTAAACGCCAGAGCTCAGGAACGCAAACACCTCCGCAGGCCTGCAGGATCCACAAGGACAGGTGTATTTCTGTGTCATACACACGTCATCCGTACACACACCATCACAGCAGGGGCTTTCAAAAGGGTTCGTTCACGCAAAAATCAGAATTATGCAATGATTTACCCAGCAGTTATTCAAAACATGATCTATTCTagctctacactgtaaaaatatcagtaaattagcagtttttttttttagtattttgtgattcatgttttcagccaatcacagccaTTTCCTTGAGCACTGGTAAATACtgtggcaaatcagcgctgtttaagaacgcgcttAAATGCTAGCGATTTTAAAACTTCATAACAGGGACAACACTATACACAACACAAGGATGTGCTACGGAGGACTTCATTGTTTAatcgctcaccgggttacataggctgccGCAGGGAAGCGTCCCCACGGTGTTTGCCTGCTGCCATgtgctgaagcctaggaggacactctTATAGAGactgtgatgttgtttgatgcctcaTCTGCTTTTAATCGTTTAGATTAAACTGAACCGagtgatattaaagtgatgtttaaacc

Function

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016579 protein deubiquitination biological_process
GO:0005768 endosome cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0016020 membrane cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051127-31 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cleavage furrow and endosome.

Ensembl:

ensembl_id ENSDART00000127729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072304 lncRNA upstream 383 52515188 ~ 52530506 (+) True XLOC_036051
TCONS_00072299 lncRNA upstream 752298 51775431 ~ 51778591 (+) False XLOC_036041
TCONS_00071972 lncRNA downstream 49732 52597388 ~ 52604066 (+) False XLOC_036053
TCONS_00070579 lncRNA downstream 53402 52601058 ~ 52601775 (+) False XLOC_036053
TCONS_00071973 lncRNA downstream 53601 52601257 ~ 52604066 (+) False XLOC_036053
TCONS_00070580 lncRNA downstream 53901 52601557 ~ 52602702 (+) True XLOC_036053
TCONS_00072305 lncRNA downstream 103495 52651151 ~ 52652449 (+) True XLOC_036056
TCONS_00070573 mRNA upstream 1247 52515188 ~ 52529642 (+) False XLOC_036051
TCONS_00070571 mRNA upstream 20572 52491436 ~ 52510317 (+) False XLOC_036050
TCONS_00070572 mRNA upstream 21332 52503340 ~ 52509557 (+) True XLOC_036050
TCONS_00070570 mRNA upstream 40415 52479026 ~ 52490474 (+) True XLOC_036049
TCONS_00070569 mRNA upstream 83788 52442785 ~ 52447101 (+) True XLOC_036048
TCONS_00070581 mRNA downstream 71709 52619365 ~ 52631064 (+) True XLOC_036054
TCONS_00070582 mRNA downstream 89851 52637507 ~ 52647703 (+) False XLOC_036055
TCONS_00070584 mRNA downstream 95213 52642869 ~ 52647790 (+) False XLOC_036055
TCONS_00070583 mRNA downstream 95213 52642869 ~ 52647790 (+) True XLOC_036055
TCONS_00070585 mRNA downstream 154155 52701811 ~ 52716316 (+) True XLOC_036057
TCONS_00070562 other upstream 367925 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070552 other upstream 1562890 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 2712018 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 3150586 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 3425838 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070587 other downstream 475883 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 476023 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 697986 53245642 ~ 53255762 (+) True XLOC_036071
TCONS_00070607 other downstream 948545 53496201 ~ 53498302 (+) True XLOC_036078

Expression Profile

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