RNA id: TCONS_00070582


Basic Information

Item Value
RNA id TCONS_00070582
length 649
RNA type mRNA
GC content 0.54
exon number 4
gene id XLOC_036055
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52637507 ~ 52647790 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGCTGTGCTCTGTGTTGAAACAGGAGGAAATTGTCGAGGTATTCTGCATGATGAGACTCAAGCAGTAAACTTACACACACCAGGTTCATTCAACATCTGTCAAAGCTACTTTGATTGAATATTGCTGCCGGTTACTGTACAATGCGGGCGTGAAGCGGAGGAGGACAGTCATAAGAGTGTTGTTGATCTGGATAAATAAACTTCATCAAGTCTGAAAACTCTCCGGAGACTGGAGGATCTTCAAGGCGCAGTGATGGTGAACAGCCAGGTCCCgggcggtgtgtgtgtgtcccgCTCGTGTGCCGGCTGCGGGGGCCGAATCTCGGACCGGTTCCTGCTGTTCTCCATGGAGCGGTACTGGCACTCGCGCTGCCTGAAGTGCTCCTGCTGTCAGGCTCAGCTGGGGGAGATCGGCTCCACGTGCTACAGCAAGAGCGGCATGATCCTCTGCAGGACCGACTACATCAGgttgTTCGGGCACACTGGAGCATGCAGTGCGTGTGGTCAGTCCATTCCTGCCAGTGAAATGGTCATGCGGGCGCAGGGAAACGTTTACCACCTTAAGTGCTTCTCCTGTGCAACGTGCAGAAACCAGTTGGTCCCCGGGGACCGGTTCCATTATGTAAACGGCACCATATTTTGTGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-149 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000163830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071972 lncRNA upstream 33441 52597388 ~ 52604066 (+) False XLOC_036053
TCONS_00071973 lncRNA upstream 33441 52601257 ~ 52604066 (+) False XLOC_036053
TCONS_00070580 lncRNA upstream 34805 52601557 ~ 52602702 (+) True XLOC_036053
TCONS_00070579 lncRNA upstream 35732 52601058 ~ 52601775 (+) False XLOC_036053
TCONS_00070577 lncRNA upstream 102909 52530938 ~ 52534598 (+) False XLOC_036052
TCONS_00072305 lncRNA downstream 3448 52651151 ~ 52652449 (+) True XLOC_036056
TCONS_00072306 lncRNA downstream 119752 52767455 ~ 52780637 (+) True XLOC_036058
TCONS_00072307 lncRNA downstream 231722 52879425 ~ 52881692 (+) False XLOC_036060
TCONS_00072308 lncRNA downstream 232248 52879951 ~ 52887683 (+) False XLOC_036060
TCONS_00072309 lncRNA downstream 232376 52880079 ~ 52887683 (+) True XLOC_036060
TCONS_00070581 mRNA upstream 6443 52619365 ~ 52631064 (+) True XLOC_036054
TCONS_00070575 mRNA upstream 89550 52530895 ~ 52547957 (+) False XLOC_036052
TCONS_00070574 mRNA upstream 89851 52530889 ~ 52547656 (+) False XLOC_036052
TCONS_00070578 mRNA upstream 101068 52530941 ~ 52536439 (+) True XLOC_036052
TCONS_00070573 mRNA upstream 107865 52515188 ~ 52529642 (+) False XLOC_036051
TCONS_00070585 mRNA downstream 54108 52701811 ~ 52716316 (+) True XLOC_036057
TCONS_00070586 mRNA downstream 141294 52788997 ~ 52826181 (+) True XLOC_036059
TCONS_00070589 mRNA downstream 403998 53051701 ~ 53062017 (+) True XLOC_036066
TCONS_00070590 mRNA downstream 417217 53064920 ~ 53069540 (+) True XLOC_036067
TCONS_00070591 mRNA downstream 432812 53080515 ~ 53096754 (+) False XLOC_036068
TCONS_00070576 other upstream 94115 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070562 other upstream 474543 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070552 other upstream 1669508 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 2818636 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 3257204 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070587 other downstream 375836 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 375976 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 597939 53245642 ~ 53255762 (+) True XLOC_036071
TCONS_00070607 other downstream 848498 53496201 ~ 53498302 (+) True XLOC_036078

Expression Profile

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