RNA id: TCONS_00072305


Basic Information

Item Value
RNA id TCONS_00072305
length 884
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_036056
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52651151 ~ 52652449 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGCTGCCAACTCTGCATCCCAAGTCCACCACCGTACCcggtgagctactgggcaaactggtaacagcagaaaagctgtccatatggaggtaaacaGTCAGCTGGTAACGTAAAAAGGAACAGAAGCCGTTGGCAGCGTCACACCTCcctgtagtgttcgttttaaagccGAAATGCAGCCTGACATACCTCTGGGTACATAATTCACATGCTCCAGGAATGTAGACAGGAGTAGGTATCCACAGTGAGCCTGTGTTTCAATATTTGGTTTAGGCCCACAGTATTTATTTCAGTGCATGCTTAGTTTCACGAGTCGAAAGAGGCTGAATTTGCTTATTTTATACACCGTCAAGCCTGAAACGACCCATACCCCTTGACAAATTCTGACtatgttcaaatgtaaataaaagctaaaaatagttttttccacagcgatgcctcttgtacattgtcttattatcttttgggagagGTCTGTGTCATTTCcacttaaaaaacaacaatttcaatgcctcattcacactagcagggactttgtagctgcctgtcactCTGGCTGGCGCCCTGCTGCTAACGCAGGTCTGTGTAGCACAGAGAATGCAAGCAGCCACTGCAGGAGCTGAAAGAAGGtcatgtgagctctactggtgctcctattggctgtcgctcaaagTCGCTCTtgatttgcataaagttgaaggattctcaactttgtcatgTCCCTCGACACGCCCACCTGGTCGCCAGCGGTCGATGTCGCTCACATAGACTTAGGGTCGCAGGAATTTGCTCGCTCTCTGTTGAAATGAACGGTTGATTTgctggtttaagctggatttttcagcaaggtTAACAGGGGTGTGaataatcataaatatatttt

Function

GO:

id name namespace
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0006996 organelle organization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0032271 regulation of protein polymerization biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071972 lncRNA upstream 47085 52597388 ~ 52604066 (+) False XLOC_036053
TCONS_00071973 lncRNA upstream 47085 52601257 ~ 52604066 (+) False XLOC_036053
TCONS_00070580 lncRNA upstream 48449 52601557 ~ 52602702 (+) True XLOC_036053
TCONS_00070579 lncRNA upstream 49376 52601058 ~ 52601775 (+) False XLOC_036053
TCONS_00070577 lncRNA upstream 116553 52530938 ~ 52534598 (+) False XLOC_036052
TCONS_00072306 lncRNA downstream 115006 52767455 ~ 52780637 (+) True XLOC_036058
TCONS_00072307 lncRNA downstream 226976 52879425 ~ 52881692 (+) False XLOC_036060
TCONS_00072308 lncRNA downstream 227502 52879951 ~ 52887683 (+) False XLOC_036060
TCONS_00072309 lncRNA downstream 227630 52880079 ~ 52887683 (+) True XLOC_036060
TCONS_00072310 lncRNA downstream 345091 52997540 ~ 53028669 (+) True XLOC_036061
TCONS_00070584 mRNA upstream 3361 52642869 ~ 52647790 (+) False XLOC_036055
TCONS_00070583 mRNA upstream 3361 52642869 ~ 52647790 (+) True XLOC_036055
TCONS_00070582 mRNA upstream 3448 52637507 ~ 52647703 (+) False XLOC_036055
TCONS_00070581 mRNA upstream 20087 52619365 ~ 52631064 (+) True XLOC_036054
TCONS_00070575 mRNA upstream 103194 52530895 ~ 52547957 (+) False XLOC_036052
TCONS_00070585 mRNA downstream 49362 52701811 ~ 52716316 (+) True XLOC_036057
TCONS_00070586 mRNA downstream 136548 52788997 ~ 52826181 (+) True XLOC_036059
TCONS_00070589 mRNA downstream 399252 53051701 ~ 53062017 (+) True XLOC_036066
TCONS_00070590 mRNA downstream 412471 53064920 ~ 53069540 (+) True XLOC_036067
TCONS_00070591 mRNA downstream 428066 53080515 ~ 53096754 (+) False XLOC_036068
TCONS_00070576 other upstream 107759 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070562 other upstream 488187 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070552 other upstream 1683152 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 2832280 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 3270848 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070587 other downstream 371090 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 371230 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 593193 53245642 ~ 53255762 (+) True XLOC_036071
TCONS_00070607 other downstream 843752 53496201 ~ 53498302 (+) True XLOC_036078

Expression Profile

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