XLOC_036212


Basic Information

Item Value
gene id XLOC_036212
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 8338793 ~ 8340951 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072374
GGAAGAAATAGTGTAATAGAAGAAAACTGAAATAGTTTTACTCAAATGTTTCCCCATAACTAATATtcttattttaagattttagcaGGTTATCggtaatttataaaaatgtaccTTATTACATGTTATGGTGAAATGGTTAAATTGTTATTAtatagtatttacatttttggagtttttgtaaatagtttttatttcttGTCTATTAAATTAGGAAGGAATAGCATTAGTATAATAGATGAATAAGTATTATTGATGACTTTTTTTCAATGGATGATATGTAGCAGAACTGATTATATAGTGGTCTCGCATTATTATCCCCCCCTAGAGCTGTATATGGACATCtgtagtttataaaaaaaattaaatatatatattagggtgtGATGAGACACTTACTCCATAAGACaacatttttagtgtttttaagaaatcttcaatgatgaaatatatgaatggtaaatattatattcaactgcaaaaaaaatcacaaattgcaAAACTGTTCTGGTGCTATTTTAAAATCAACTTGTTATGAAtgtgatttaacttttattttaatcaattctATACAGTAAAGGACATGAaaacactgctaaatattttgctATTATATGAATGGAAAATTGGGCAGCTCGATGGTGCACAATTGTCTTACAGCAAgcagatcgctggttcgagcccgggctgggtcagttggcatctctggcATTtcatgttagtgtgggtttcctctgggtactcctggtttcctccacaagtccaaagacatgtggtaatggtgtattgaataaactaaattggtcgtagtgtatgtgtgtgcatgtgaaagtgtatgggtgttacccagtactgggttgcagctgaaagggcgtcTGAGAATCGCATTCCTTCAAACAAAtcgaacttaaaaaaaataaaaaggtgtgTAATTTTTCGTCTTTAATTTTTGGTTTTAAAAGCAGTTCCACGTTCAGTATTATTGTCGCTAACAGTCCTATacaacagtaatagtttgattacatCGTTTACGTGTCGACTACACTTCAGTAATGCGACTGAAATATGAATACTGAATGTGTCTTAAAGCCATAATAGTCATAAACACTAATGAAATTAAGCATATCTACAGTGCAATTCCATCGCTTGTTATGAGTTGTGGTTAATGTGTGTTGCTGCAGTTGTAGAAGCCTCTGCTTTTGGACGCGGCAACCTTTGAACTCCGGTTAAGTAAAAAGCAGTTACTTCGCACTCACCCTCCCAAGCAAACTCAACTCCGAGGCCAGCGTGTCAAGTGTGCAACGCACTTTGTGCGGTTCAAACACAATCCTGTGCTTAGTGCTTAAATCACGCTTACACATTATCATAACCTCACAACTCAcgagacaacttttcacctcCACAAGAAATCGAATAAGTGTTGCAAGATCTCGTAGCCTGAGAACTCatcacatccctaatatatacagATTTCCAAAATATGTGCCATAACATAATaaagtgatcttttttttttctacagctgTATatggaaacaaaaaaataataattatatacacaAAATAAATCCACATCATGACTTTTGTGTTTGAAAGTGATCATTTATTCTCTTAAGCTCTTAAGTCTTTATTGAATCAGTCAAGTATTCATACAGTGTTCTGTATGTTCACAAACAAGCATTCCTCACACAAATTGGCAGACAAATATAAAAAGGTGAGGGacttttatttttcctctttttctttcctGTCTTCATGTTTTGCAGATGGCATGTCAAGGCACTATTTTAACATATAAATATGTGACCCTCTACACAATGAAATGACCGTACAATGAAAACGCGACAGACTACAGACATAATCATCTCTCCAGAGGTTGTTAGGAGTTGATCCAGGGGTGTTGCAGACATTGGGCGGCCGTGGCTCGCTTCTCCGGGATGAACTCCAGCATGGTGAGCAGGAAATCACTGAACTGAGCTGCCTGATCCAGAGGCCACTCGTATTTTTCCAGCAGCACCTCGAACAAACCCCATGGCTTCAGGTTAGCGATGTGCCTCAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072374 True 2058 lncRNA 0.36 2 8338793 8340951

Neighbor

gene id symbol gene type direction distance location
XLOC_036211 NA coding downstream 244744 8091270 ~ 8094049 (-)
XLOC_036210 NA coding downstream 425858 7907271 ~ 7912935 (-)
XLOC_036209 NA coding downstream 459859 7878691 ~ 7878934 (-)
XLOC_036208 zgc:113363 coding downstream 487203 7839208 ~ 7851590 (-)
XLOC_036207 NA coding downstream 560581 7745910 ~ 7778212 (-)
XLOC_036213 tsr2 coding upstream 131 8341082 ~ 8349653 (-)
XLOC_036214 cdk16 coding upstream 21490 8362441 ~ 8446668 (-)
XLOC_036215 abt1 coding upstream 142713 8483664 ~ 8489886 (-)
XLOC_036216 CR457452.2 coding upstream 179091 8520042 ~ 8520173 (-)
XLOC_036217 CR457452.1 coding upstream 250720 8591671 ~ 8591788 (-)
XLOC_036198 CU302304.1 non-coding downstream 1180196 7158483 ~ 7158597 (-)
XLOC_036219 NA non-coding upstream 403841 8744792 ~ 8752008 (-)
XLOC_036220 NA non-coding upstream 451188 8792139 ~ 8801686 (-)
XLOC_036221 NA non-coding upstream 616630 8957581 ~ 8967619 (-)

Expression


Co-expression Network