XLOC_036213 (tsr2)


Basic Information

Item Value
gene id XLOC_036213
gene name tsr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 8341082 ~ 8349653 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070797
GCCAGTGACCGCAGAGATGGgggacacactcattcacaggaACCTCGACCCAAACAAGGATTAAAGAAACAACCTGCGACGAAACAGGAATCTCTTGAAATCTGCGATCGACCCTTCGGGTATGCTGGTTTTCAAGATGGCGCCGCTCTCATCGTCCACACGTGAGGTGTTCAGTGAAGCAGTTCGGGCTGTTTTGGAAACTTGGCCGGTGCTGCAAATAGCGGTGGACAACGGCTTCGGTGGAGCGTTCAGTCAGCAGAAGGCGGAGTGGATGGTGGACGCGCTGCAGCAATACTTCACCGACAACGGTGATCTCCAGCAGGATGAGGTGGAGGACTTTATCTCTGAGCTCATGAACAATGAGTTCAACACAGTGGTGGATGATGGCAGTCTGCCTCAGGTGGCGCAGCAGGTGTGTGGGATGTTCCAGCAGTGTGAGCAGGGCAGATTGGCGGAGGTCAGAGAGCAGATCCTTAAACTGAAACAGAAGAAGACAAGCAGCGGAAGAGCTAAAGCCACTCCTGCACAAACACctcaggatgatgatgatgatgatgatgaggaagaGGCTATGGATTGTGAAGGAGGATCAGCAGTGGCTTCAGTCAGCAGTACAGCAGTGAATGATCTTCATcatgaggaggaggaagatgacGGATGGACAGTCGTGCGCAGAAAAAAGTGACCAATCTCTCACTTCCTGCATTcatgacatttaaagacattttaagggcTTGTGTCACTTCTACTTTGGACTTTTCTGCTTTTTCAGCCACTGATATAAAATGGTAGGATCTCCTCAGGCAACCTTATGAAGTCCTGTCTCTGGAACACAGATTGGATGTTGTCCAGGGAAATTCAGGTGCATATACATTcatgcatttaaatgtttatggtCGAATCATTTATCACAGTTTCTCTGTTTGACTTCATctgaatgcatttatttataagcGGTAGGTCAATGCCTGCTCCTCTGTCGCCCCCTTGTGGAACTATAGAATCACAGCAGCAGTGGTGAATATGCTGTTTAACAGGCACACCAAGAGAAAAAACTGCAGTTACAGAGCTTGTTAAATGATTAACATCATCATTTCttccacattttaaataaaaatattgtctgtcttca
>TCONS_00070798
CGGGTATGCTGGTTTTCAAGATGGCGCCGCTCTCATCGTCCACACGTGAGGTGTTCAGTGAAGCAGTTCGGGCTGTTTTGGAAACTTGGCCGGTGCTGCAAATAGCGGTGGACAACGGCTTCGGTGGAGCGTTCAGTCAGCAGAAGGCGGAGTGGATGGTGGACGCGCTGCAGCAATACTTCACCGACAACGGTGATCTCCAGCAGGATGAGGTGGAGGACTTTATCTCTGAGCTCATGAACAATGAGTTCAACACAGTGGTGGATGATGGCAGTCTGCCTCAGGTGGCGCAGCAGGTGTGTGGGATGTTCCAGCAGTGTGAGCAGGGCAGATTGGCGGAGGTCAGAGAGCAGATCCTTAAACTGAAACAGAAGAAGACAAGCAGCGGAAGAGCTAAAGCCACTCCTGCACAAACACctcaggatgatgatgatgatgatgatgaggaagaGGCTATGGATTGTGAAGGAGGATCAGCAGTGGCTTCAGTCAGCAGTACAGCAGTGAATGATCTTCATcatgaggaggaggaagatgacGGATGGACAGTCGTGCGCAGAAAAAAGTGACCAATCTCTCACTTCCTGCATTcatgacatttaaagacattttaagggcTTGTGTCACTTCTACTTTGGACTTTTCTGCTTTTTCAGCCACTGATATAAAATGGTAGGATCTCCTCAGGCAACCTTATGAAGTCCTGTCTCTGGAACACAGATTGGATGTTGTCCAGGGAAATTCAGGTGCATATACATTcatgcatttaaatgtttatggtCGAATCATTTATCACAGTTTCTCTGTTTGACTTCATctgaatgcatttatttataagcGGTAGGTCAATGCCTGCTCCTCTGTCGCCCCCTTGTGGAACTATAGAATCACAGCAGCAGTGGTGAATATGCTGTTTAACAGGCACACCAAGAGAAAAAACTGCAGTTACAGAGCTTGTTAAATGATTAACATCATCATTTCttccacattttaaataaaaatattgtctgtcttc
>TCONS_00070799
ATGGCGCCGCTCTCATCGTCCACACGTGAGGTGTTCAGTGAAGCAGTTCGGGCTGTTTTGGAAACTTGGCCGGTGCTGCAAATAGCGGTGGACAACGGCTTCGGTGGAGCGTTCAGTCAGCAGAAGGCGGAGTGGATGGTGGACGCGCTGCAGCAATACTTCACCGACAACGGTGATCTCCAGCAGGATGAGGTGGAGGACTTTATCTCTGAGCTCATGAACAATGAGTTCAACACAGTGGTGGATGATGGCAGTCTGCCTCAGGTGGCGCAGCAGGTGTGTGGGATGTTCCAGCAGTGTGAGCAGGGCAGATTGGCGGAGGTCAGAGAGCAGATCCTTAAACTGAAACAGAAGAAGACAAGCAGC

Function

symbol description
tsr2 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 14 with mandibulofacial dysostosis. Orthologous to human TSR2 (TSR2 ribosome maturation factor).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-021231-2 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 14 with mandibulofacial dysostosis. Orthologous to human TSR2 (TSR2 ribosome maturation factor).

Ensembl:

ensembl_id ENSDARG00000005772

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070797 False 1132 mRNA 0.47 6 8341082 8349653
TCONS_00070798 False 1015 mRNA 0.46 5 8341083 8346043
TCONS_00070799 True 366 mRNA 0.55 4 8343199 8346023

Neighbor

gene id symbol gene type direction distance location
XLOC_036212 NA coding downstream 131 8338793 ~ 8340951 (-)
XLOC_036211 NA coding downstream 247033 8091270 ~ 8094049 (-)
XLOC_036210 NA coding downstream 428147 7907271 ~ 7912935 (-)
XLOC_036209 NA coding downstream 462148 7878691 ~ 7878934 (-)
XLOC_036208 zgc:113363 coding downstream 489492 7839208 ~ 7851590 (-)
XLOC_036214 cdk16 coding upstream 12788 8362441 ~ 8446668 (-)
XLOC_036215 abt1 coding upstream 134011 8483664 ~ 8489886 (-)
XLOC_036216 CR457452.2 coding upstream 170389 8520042 ~ 8520173 (-)
XLOC_036217 CR457452.1 coding upstream 242018 8591671 ~ 8591788 (-)
XLOC_036218 zgc:86609 coding upstream 336477 8686130 ~ 8698607 (-)
XLOC_036207 NA non-coding downstream 562870 7745910 ~ 7778212 (-)
XLOC_036219 NA non-coding upstream 395139 8744792 ~ 8752008 (-)
XLOC_036220 NA non-coding upstream 442486 8792139 ~ 8801686 (-)
XLOC_036221 NA non-coding upstream 607928 8957581 ~ 8967619 (-)

Expression


Co-expression Network