LOC110500496 (LOC106608847)


Basic Information

Item Value
gene id LOC110500496
gene name LOC106608847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43203539 ~ 43219682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577891.2
GGTTTGGCTGTTTAACATTGGAGTTTGTTTGGGGCGTTGTGACAGCCGAAGCCTCAGTCTGAGCTTCTAGCACCACCCCCTCTCCTGTTCCAAGTAAACAATACGGAAGTTGCCCAGAACTCTGCCTATCAACAAGAAAGACGACAGAAAGGGTGAAGTCTTCCTGAACGAGACATTAGCGATGATGGGGCCACTCAGCAAGGCGGACTGAGGGGGATCTGGCTAGATGTTATTCCATTCTAGTTTGCTTTCTTTTCACCATTTTTGCTCTTTCATGAGCACCTGCATTTCAGAGGAGCACCATCATTTCAGAGGACCATCATCATTTTAGAGGAGCACCATCATCAGAATGACTGTCTCTTTCAACCTTTGTGTCATCAACATTTTGTTTGTAACTGCCTACAGCAGCCTGGAGCTGGTCTCCAGTACTGCTCATTGTGGACGATCTCCCCAAGTCCTGGAGGCTGCGAGAGGAGAGATCAGAAGCTTTGTGCACCGCAGCTCGTCCTACCGCCCTCGGCCCTTCTACTGTAGTTGGATTATCAAGGCACATGTAGGAGAGCCTGTTATTCTCAGTTTCTCCCAGTTTTCCACACGGTGTAAGAAGGAATGGGTCTCGGTGACGTCATCGACTGGCAAGCCCATTACCCTCTGTGGTTCCGACCTGCCGAAACCCATGGAGTTGATGGGGGGAAACATTACAGTGACGCACCACTTCCTGCCACACTTATTCCCTGTGTCTGCGTTCCGCCTGGGCTATGTCAGAGactccGGGGACTGTACGGGTGTGGACTTTGAGTGTTTGGGCGGGCGCTGCCTGCCCCTGTCGTGGCGTTGTAACGGCCGGGTGGAGTGCCTGGGTGAAGGGGTGGGCCTGGGCGTAGACGAGCAAGACtgtgatggagagatgaagatcCTGAATCTGGATCTTGAGCATGGCAAAACAGTGGTGGCCACCGCCACACCAGAGTCCTACAGGGCGCGGGAGACCGTAAGAGAGAAGAACAGGGGGAGTAACAGCAGAGGGAGGGATTGGGAAACAGTAGGGAAGGCACCGGGCGAgctggagaaagaggaggaggagacagagaagcaAGTAGACGAGAATGGGGACCACACCAAGGAAAAGGAGCCAACCAATCCTATATATGACTTCTGGCAGTTCCAGGCTCACAGAGCCCACCCCAGTGTGACCCGGGCCCCCGTTGAGTGGCCCTGTGGGGGCCTCCTCCAGGCCTTCTATGGGACGTTCACCCCTCCTTCCATCAGGGGCCCCTCTCTGTTCTGTGTGTGGACCCTGGACCCACAGGACTCTAGGCCTCTGAAGCTGGACCTGCGGCTGCTGGAGCTGGGGCCTGGAGACACGGTCACCATCACTGACAGACAGCAGGGCACCGGGGAACTCCTCAAAACTATCACCAGCGCGTCCAATTACAAGGCCATCCAGGTCGAGTCCCGGACCGGCCTCCTCTCCCTGACCTATCGTACGCTCCCCGGCTCTGAGGGGCTAGGCTTCAACGCCACCTACCGTGTCGGGGGCTACTGCCCCCCCTGGGAAGGTAAATGTGGGGGTGCCGCGGGGGGCTGCTACACCCAGGAACAGAAGTGTGACGGGCACTGGGACTGTCCCAAGACGGGACATGACGAAGCAGGGTGCAGGGGATGTCCCCGGGACCAGTTTGCCTGTGGAGTGGCTGGGCAGAGGGCACTGCTGGCGGGGCATAGCTTCCTAGGGCGTCCGGTGTGTTTCCCTGCCAAGGAGAGGTGTAACTACCAGCTGTACTGTTCTGATGGGAGCGATGAGAGAGACTGTTCTATATGTAAACCTGGGACCTTCCACTGTGACAGTGACAgGTGTGTTTTTGAGAGCTGGCGCTGTGACGGCCAGCTGGACTGCAAGGACGGGACAGACGAGCTGAACTGCACCGTGACCATACCTCCCAAGGACGTCACCTGCGGGGGCCTCCTCCAGACCTTCTATGGGACGTTCGCCCCTCCTTCCATCAGGGGCCCCCCTCTGTTCTGTGTGTGGACCCTGGACCCCCAGGACTCTAGGCCTCTGAAGCTGGACCTGCGGCTGCTGGAGCTGGGGCCTGGAGACACGGTCACCATCACTGACAGACAGCAGGGCACCGGGGAACTCCTCAAAACTATCACTAATGCGTCCAATTACAAGACCATCCAGGTCGAGTCCAGGACCGGCCTCCTCTCCCTGACCTATCGTACGCTCCCCGGCTCTGAGGGGCTAGGCTTCAACGCCACCTACCGTGTCGGGGGCTACTGCCCCCCCTGGGAAGGTAAATGTGGGGGTGCCGCGGGGGGCTGCTACACCCAGGAACAGAAGTGTGACGGGCACTGGGACTGTCCCGAGACGGGACATGACGAAGCAGGGTGCAGGGGATGTCCCCGGGACCAGTTTGCCTGTGGAGTGTCTGGGCAGAGGGCACTGCTGGCGGGGCATAGCTTCCTAGGGCGTCCGGTGTGTTTCCCTGCCAAGGAGAGGTGTAACTACCAGCTGTACTGTTCTGATGGGAGCGATGAGAGAGACTGTTCTATATGTCAACCTGGGACCTTCCACTGCGACAGTGACAGGTGTGTGTTTGAGAGCTGGCGCTGTGACGGCCAGGTGGACTGCAAGGACGGGACAGACGAGCTGAACTGTTCCGTGACCCTGCCTCGGAAGGTCATCACCGCGGCAACCGTTGGCAGCTTGGTTTGTGGGCTGTTGCTCGTCATTGCTATGGGCTGCACCTGCAAGCTTTACTCACTGCGCACCCGAGAATACAGTATGTTTGCTCCAATCAGCCGCCAAGAGGCGGCGCTGATCCAGCAGCAGGCTCCTCCCTCCTACGGTCAGCTGATTGCCCAGGGCATCATCCCTCCAGTGGAGGACTTCCCCACAGAGAACCCCAACGAGtCTTCCTCTCTTACTCTGAGAGGTATCCTCCAGCTCCTCAGACAGGACACCGCCAACTCTCCACGTCGCCGTCGCCGGCCCCGATTCGTCCGCCGGGCTGTCCGTCGCATGCGGAGGTGGGGCTTAATCCCTAGAACCGCCTCCAGGCCCTCCCAGCCTTCCAGTTCCGCCCCCCAGCAGACAGATCCCACCTCTACTGGTGCAGAGCCCAGTCAATCAACTCCCGCAACTTCCTCATTGGCTGTGGAAGCCGTCAATCTGCCGTTGCCACAGAAACTAGGCTTGCTCCCTCAGACGGTGCAGCACCCACCACCGCCGCCTCCCAcctcccttcctccacccctcGTCTCTATCCCAGCCACCCCCCAGAGCTTCCCTGTGGCTGCCCCTCCCACCCCCAGTAGCCCCTCCCTGGCCTTGCTCTTCCACTCTCTGGCGCGCGGTATCTCTCGCTTCCGCGCCTCgccgttctcctcctcctcccccaccaactccctgcccctctccgcatccccctctttctcctcttcggAGGATGAGGTGCTGCTTATCCCCCTCTCGGAGGACATGACCTCGGAGGATGACGTCCCCCTGCTAACCCTTGATCCCTGACCTTATCCAAACCCCACCGCTATCCCCCTCCCTAAATGTTGTGCACAGTGCTCGCGCACAGGAGCACTGCAAGGCTCTCCCCGTCTCTGTGCTGATGTAGTGCCTTTTGAATTACATTGGGTTGGTTTTGACTGACTGTAGAAATCTAGTATTCAATGCTTTTATGTTATTGAGTGTGGGACCTCCTTGAGAAAGTGTATACGTGTGCCTGCCTCTGCGTGCGTGTAGTCATGAATGTGTGTAGTCTGAAAGTGGTGAACTTTGCACAGAGAATCTTCCTCCCTCATGCTCTAATATATCAGCTACTGTCAAATGAGTGATTTTGTTTTTAACACATGAAAGAGCTTGTCTTTATGAGACTCGTATGTGTGTTTTAGTATTTATGAGGGTGAGTGTAGGGCGGCAGTGTAAGGGTATGGAAGATATTCTAATATTATAagttataccccccccccccccgtttaaGTGCCTTGTTTAGAAGCTTCCTGCATATGATGAATTTGAATGATTACACACACGTACTGCATGCATACTGTCACAAATacgctatatatacaaaagtatgtggacaccccttcaaattagtgggctctgctatttcagccacacccgttgcttaccggtgtataaaatcgagcacacagccatgcagtctCCAGTAGAATGGtcct

Function

NR:

description
low-density lipoprotein receptor-related protein 10-like

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577891.2 True 4200 mRNA 0.57 12 43203539 43219682

Neighbor

gene id symbol gene type direction distance location
LOC110500494 LOC106608896 coding upstream 41846 43158688 ~ 43161693 (+)
LOC110500490 LOC106608850 coding upstream 59116 43112790 ~ 43144423 (+)
LOC118943019 NA coding upstream 81346 43122092 ~ 43122193 (+)
LOC118943016 NA coding upstream 84811 43118610 ~ 43118728 (+)
LOC118943017 NA coding upstream 87520 43115901 ~ 43116019 (+)
LOC118942803 LOC106608806 coding downstream 2657 43222339 ~ 43232208 (+)
LOC110500497 LOC106608843 coding downstream 14964 43234646 ~ 43245107 (+)
LOC110500499 ubil coding downstream 47375 43267057 ~ 43268143 (+)
LOC110500500 LOC106596943 coding downstream 48928 43268610 ~ 43278166 (+)
LOC110500501 NA coding downstream 67508 43287190 ~ 43299305 (+)
G1740301 NA non-coding upstream 913 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 3250 43199907 ~ 43200289 (+)
G1740276 NA non-coding upstream 31950 43171376 ~ 43171589 (+)
G1740274 NA non-coding upstream 33999 43169263 ~ 43169540 (+)
G1740335 NA non-coding downstream 108713 43328395 ~ 43328602 (+)
G1740336 LOC106565892 non-coding downstream 109221 43328903 ~ 43329165 (+)
G1740337 NA non-coding downstream 110388 43330070 ~ 43330342 (+)
G1740339 NA non-coding downstream 112448 43332130 ~ 43332567 (+)
G1740340 NA non-coding downstream 113794 43333476 ~ 43333693 (+)
G1739440 vax2 other upstream 701182 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 848212 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 915039 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1305683 41888811 ~ 41897856 (+)
G1738119 NA other upstream 2174403 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 35971 43255653 ~ 43327738 (+)
G1740366 LOC106608832 other downstream 169507 43389189 ~ 43390299 (+)
G1740398 NA other downstream 227368 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 250136 43469818 ~ 43470325 (+)

Expression


Co-expression Network