LOC110500896 (LOC106591079)


Basic Information

Item Value
gene id LOC110500896
gene name LOC106591079
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 55474222 ~ 55476403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956520.1
gagtaatatagcgagagagagatagacagagagtaagagattTCTACAAACAGTGATGGAAACGTTGTTGTATCTCACCCTGCTAATCTCAGGGTTCTACACACCTTCCTCATGCCTTCATCAGTATCACCTCATTAGCAACAATACGAACTGGACTGATGCCCAGAGTTACTGCAGAGCACATTACACTGACCTGGCCACAGTAGATGACATGGAGGACCTGAACAGGCTGATTACCAGTGTCATTGACTATAAATTAAAATTAAGACACTGGATTGGACTGAAGAAGGGAGACTCAATGAAGTGGCACTGGTCTCTGGCAGACAGACGTTtctacagagagggggagactgaGTTCAGAAACTGGGACACTGGGACACCCCAAAATGGTAACTGTGCATTAATGAGTACAGCTGGTCTGTGGAACAACACATCCTGTGATGACCAGCATCACTTCCTCTGTTATGATGGAAAACAAGACACCAACCTAACATACGTCTTAATTCAGGAGAACAGGACCTGGATAGATGCTCAGAGTTACTGCAGACAGAATCACACAGACCTGGTCAGTGTGAGGAACCAGACTGAGAACACAGAGATAAATAAGAAGATATCACTGAGGGGACTTCCTGTGTGGATCGGTCTGTTTCTAGACTCCTGGAGATGGTCAGACCAGAGTGACTCCTCATTCAGAAACTGGCAGTCAGGATGGCCTTCAACAGATCAGAGATACAACTGTACTCTGATGTCGTCTTATGTTCTTGAAaatttattttctttttattaTTATTCTGAAAAGTATAAATATCTTAAATGGAGAAATCTAATAAATGTGTCCTGTGACGTCCGCAAACCTTTCATCTGCTATGGTAAGAGAACTCTGTTTCCCCCATGA

Function

NR:

description
macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956520.1 True 895 mRNA 0.43 5 55474222 55476403

Neighbor

gene id symbol gene type direction distance location
LOC118942953 NA coding upstream 1178 55456057 ~ 55473044 (+)
LOC110500895 LOC106577483 coding upstream 44516 55349915 ~ 55429706 (+)
LOC110500894 rbpj coding upstream 205562 55170376 ~ 55268660 (+)
LOC110500752 NA coding upstream 325234 55142224 ~ 55148988 (+)
smim20 NA coding upstream 341046 55131968 ~ 55133176 (+)
LOC118942951 LOC106608541 coding downstream 32 55476435 ~ 55478920 (+)
LOC110500897 LOC106591080 coding downstream 26137 55502540 ~ 55505313 (+)
LOC118942952 NA coding downstream 35004 55511407 ~ 55512952 (+)
LOC118936467 LOC106591080 coding downstream 40166 55516569 ~ 55557902 (+)
LOC110500898 LOC106608541 coding downstream 66455 55542858 ~ 55556655 (+)
G1753304 NA non-coding upstream 33468 55440388 ~ 55440754 (+)
G1753303 NA non-coding upstream 37259 55434688 ~ 55436963 (+)
G1753269 NA non-coding upstream 41281 55431631 ~ 55432941 (+)
G1753268 NA non-coding upstream 42916 55430644 ~ 55431306 (+)
G1753260 NA non-coding upstream 146658 55326893 ~ 55327564 (+)
G1754413 NA non-coding downstream 122347 55598750 ~ 55598988 (+)
G1754447 NA non-coding downstream 148999 55625402 ~ 55625604 (+)
G1754482 NA non-coding downstream 189144 55665547 ~ 55665750 (+)
G1754601 NA non-coding downstream 296510 55772913 ~ 55773150 (+)
G1753100 NA other upstream 462544 55001579 ~ 55011678 (+)
LOC110500735 ablim2 other upstream 1166732 54206483 ~ 54342581 (+)
LOC110500722 NA other upstream 2217621 53251413 ~ 53256660 (+)
G1751699 LOC106608599 other upstream 2501839 52962449 ~ 52972383 (+)
G1750050 NA other upstream 3277215 52191200 ~ 52197007 (+)
LOC110500754 LOC106591080 other downstream 114202 55590450 ~ 55592100 (+)
G1755158 NA other downstream 910004 56386407 ~ 56387622 (+)
G1755570 NA other downstream 1317328 56793731 ~ 56794574 (+)
G1756789 NA other downstream 2450077 57926480 ~ 57928244 (+)
rwdd rwdd4 other downstream 2928881 58405236 ~ 58411726 (+)

Expression


Co-expression Network