XLOC_036354 (tmem47)


Basic Information

Item Value
gene id XLOC_036354
gene name tmem47
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18565904 ~ 18582922 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071064
CGAGGGCAGCTGTTACAGCGTCCCTCTCGCGCAGCTGTTCCACAATCTCCAAAACACTGATCGCGAATACGGATCCAAAGTGTGCGGATAGTCCTCTTTTTCCTCTCCGAGACGCAGCGCAGCATCAGCCCAGGGCATCCAGCCGACATGGCCTCATCCGTGAGCGGAGCAGAGGAAGTGCGCGTGTCGGCGTTGACGCCCCTGAAGTTGGTGGGTCTGGTGTGTGTTTTCCTCGCGCTGTGCCTGGATGTCGGGGCCGTGCTGAGTCCGGCGTGGGTCACCGCCGATGACCAGTACCACCTGTCCCTGTGGAAGTCGTGCTCGAAGCCCGCTGCCTCCGCGACCTGGCGGTGCAACAGCACACTGGGGACCGACTGGCAGATCGCCACATTGGCTTTGCTGTTGGGTGGAGCGTTTCTTATCCTCCTCTCCTTCCTGGTGGCCCTGGTGTCTGTTTGCATTCGTTCCAGGAGACGCTTCTACCGACCGGTCGCGATTATGCTCTTCGCTGCAGTGGTCCTGCAGGCCTGCTGTTTGGTGCTGTATCCCATCAAGTTCATCGAGACCATCAGTTTGAGAATATACCACGAGTTCAACTGGGGGTACGGTCTGGCCTGGGGAGCCACCATCTTCTCCTTCGGCGGAGCCATTCTCTACTGCCTGAACCCTAAGAACTACGAAGATTATTATTAAACCACAGCCACAATGCACTTCGATGTCCCTCTTCACTGTTGTGATAGCAGCTCATGCACTgaactgacacaaagaccctcaaaATGCGGGGCAGACGCTGAGCTGATAGATCCATATTTTGATTCTCCTTCAGATTGCTCTATTATTCAATTAAACCCTTTCGTCACACTCTTTCTTTTTCCGTCTGTCATATCTCTCTCTGCTCGTGCCGATTTAACACGTCTGATCATCTTCTGACTGTCAGATGAGCGTTTGACTCCAGATGTCAGTCTGCGTTCGCAGGAGAGCTGCTAGTCTGTGATGTAATCAGCAGGGAAACCTCCATCTGTGGTGGGATCTGAAGCGAGGCAGACAGATGCCTGCAAATCTGACACTATCAAACTTTGCCATGAGAGACGCAGCATTTGTTTTGGGATTTGACAGATGCAGGAGAGAAGGTTTAAAGGCAATTATAGTCTCTGGAATGCATcagaagataaaaaaataaacaagctgcgtccgaaattgcatacgtccctactatatagtatgtgaaaaacagtatgtgagtcAAGTAGTTTGAAAAACAGCTAGCGAGAAATACCTGAATGCCATACTGCTTCTGGCGAAATTTTGTAGTGCGCATCTGATGGATGCCATACTGTCCTATGATGCCACATTTGAAAATTCTTGAATGTGAGTAAAGCAACACTATTGATGTGGATGAGTCATTTGATAGTCACAATGGCAGAATGCTGAAAATCCAATcatactattgaccttattctaaaatgcggaagtgcgcctgttttcgcgattgtcttagaacttccgattcagtcccctatgggagaaattactaggactaataaatggcaaaaaatggtcaaactacttgctctacaaacaaatgtttgcatgactacacagtccaagtagaataatataataagaaaatatcaaattgcaacatcaagcagcataacgagcagtttttaacgtcaaaaaatgaatggaagtgaatgtgaccggaagtcgcgagacaaaaagattcaaatggcagcggaCGCTCAtcagcggagaataaggtgaatataaaACTTCCTTTTATAATGGTCGTTTTCTATTTCATTATATGTTCGTTATATTGTAtaatgcagtgtttcccaactctgttcctaaaggcacaccagcagtacacatttttaacctcTTTCGAATCAAACACTTctaaatcaactcatcagaacattagaagagactcaaACCTGTTTAGGTtgatgggtcagataagggacttatccaaaatatgtactgttagtGTCCATCCAGGAACAGAGTTTGTAAGCACTGGTATAACCGTCGTGCAATTTTGGAAGCAGCAACATCATAGGTAttcaaagtcaattcctggagagccgcagttctgcacagttttgctccaaccttaatcaaacacagctgacgCAAATGATCgaggtgttcaaaagaatcttgattagttgcatcagctgttttgattagggttggagcaaaactgtgcagagctgcggctctctaGGAATTGACTTTGACATCTGTGAGTTACAGTGTTATTAGTGCACAAGAGCAGTCAAACGATTGAGTATAATGATAAGCTTGTCAAAAACAGGCTTGAGGTGGAGGCACATTTACAAAAATCGAGCAAACTTTCACAGACAAAACGGTTCATTGTATACCATCAATATTCAAGTGATATTTTAAgcacagttcaccaaaaaaaagaaaaaaaaagtctaatttaaaataaagcttTGTTTGATTTCATGTTTGCGGTCAAGTTGGCTTTGTTGATAAACCGCTAAAACGTGACACACATCCCACGAAAAATCCCATAGAATCGATCAAATCTGATTGTGACTTTGAACCTTTTGAAGCGTTTCTAATTTTCTGTGCCTTTTGCATCAGACGCTAAGCCAACAATCCGTGGACATGACGTCTGAGGCCGAGACTACGTTTTGTTGGTCAAGACAGCAAATTCACGCAAACAGTTTTTAATCCTCTGCAAAATATTTTGCTGATTGAAATTACGCAGACAAAATAAAGGACTATATGAAGCGAAGTGTGAAGTGCAGATCAGATCAAGCTACATTCTGTTGGTCAACATTACTAATTAGTTTGACCAGTTTTGGAACTCATTGCATTTTTCAAACGCGTGGAATCATTTTGAGCAGAATTTTGTCTAGTCTGTAGTCTaggagtgtcaaactcagttcctggagggccgctacCCTACACAGTTCAGTTCCAAATACTTGGTCACACTGCCCTATAAACATCCATTTATACGCATACGACTGCGGCAGACCGGATACGCAACCTCCTGCGTCAAGTTTCGCTATTCACTGCATTGAAAAATTCAAGCTTGGTGCATTCAGACATGTGAAATCGTGGTTGTGTAAGTATAATACATGACCTTTGTGGACAGAAATTGTCTAATCATCGTtttatcccgccccttttcgcagcgctgtacaacagaatttggcatgctcaaactctagtgtgaccacggctttacctgtaggtttcaaacaagcctgaatgactcaattattttgatcaggtgtgtttaattagggttggaactcaagccccggtcacactgcactttttgccccatagactttcattcatacaagttttgcagttcgctgtgTTGAAAAGTTCAAACTTGGTAAACTTTATCCTGCGAAATTGCGTGataccaatcgaagatcaaacaTGTCCTTTCTggacagacatttaaaatatggaccagtcgcttgttttaaaaaaaaaaaaaaaagactaaccatcttgtttaatcccgccccttttcgcagtgctgGTGACCGCGGtattacctgtaggtttcaaacaagccttaaggactcaattagtttgatcaggtgtgtttaattagggttaaaacaaaactgtgcagagccgcggccctccaggaactgagtccCAAATTGCACACTATACACCtccacactcaacagcatagtatatgaatgtagtgtcgtcccaaatggaacactaatgttttttttttttttttaccaagcggAAATTCAAATTGTTTCCcgtttgctttcacaatccaaaataaaaaaagtaatccaaatggtTGTTGGTAGATCGGAtacggttgcggctggaagttaacgaaaattatttatattatttattaaatttcacatttattgattttgttaacgtttacccccaccccaaccctaaacccaactgacacagtaacgtaaaaacagtagttgtaccaagtattatttatgctattaaATTACCCAAGACATTGTCATttttaaccctaaacccaatcgtcacagtactgtgaaaatatgaattattgttatactgTGTCATAAAAATTGCTGCCATAATAATGtacatatcgcacttccggccggccgatctagactttaccaatcCAGCGCCAGTGCCCGAAAGCTCCACCCCTTCTGCTACATGAGCAAAGCAGCGGCCGTTGAGTGTGTGATGTGTCCAACAATCTACACTTCTGTTTAACGGTtgaagttttcagtgtgaacgcactacttacactatttatactaaaaAATgccatagaatagtgcataagtatgcgatttgggacgcacatTTTGACACTTGCGCTGTTGTCTGTTGGCAATAGCATATCGATGTATGAAAGTCTTAAAAATCAAGCAAAACTCTGTAGGTCGGTGAGGTGAAATTAAACATTTTGCACAAAAGAGGTTCTTGTTCAGTGACAGTAATGCATGAAGCATCAACAGTTTGTTAAAATGAAGCCACATTTTGTTGATAAACAGAATTATATCTAATTTAAACCAGTTGTAAAATCTGCTGGAGAAAACATTTTACGCTTAAGCAGATTTCCACGCAGCATCGATTACTATTGAAATAGCATATATTTCAATGTTAAAAACGTATCACACATTTATGCATAGATAAGCAAAGCAAAACTCTCTTAATGCTAAGAAACAGCTATTATTTTAAGCACATATCATGTACATAGCACACAAATAGTTTCTTCGTGCACATCTGAATACATGTTTCATTTTTAGGGGATCTGGTAGAAGATACTTTGCATTGTAGAGAACCTAGGTCTTGTGGTGTTTCGAAGCCTTGCATATAGACTAGTGTTTTGACTGGTATCTGAAGAGTGATTATTAGTCTTCTTTTGCATACGTATCCAAACAGGTAGTCAAAAGCAGACTGTAGGGTTGTTTCTTAGCACTGTCGGTCTGTTGTGCGCATGTTAGTGTGTTTGAACGAGGATGCATGTATCATTTGAATGCGTGTTTGAGTGATTGCGTGCTTTCTGTTGGGATTTTTTCCTGTCCCGTATGCAGTTGTGACATACTGTACTAATTTATATACTAACCAAAATAAAGAGATAAATAAGAA

Function

symbol description
tmem47 Predicted to be involved in cell-cell adhesion. Predicted to be located in adherens junction and membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in gill; heart; integument; and pleuroperitoneal region. Orthologous to human TMEM47 (transmembrane protein 47).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2644 Predicted to be involved in cell-cell adhesion. Predicted to be located in adherens junction and membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in gill; heart; integument; and pleuroperitoneal region. Orthologous to human TMEM47 (transmembrane protein 47).

Ensembl:

ensembl_id ENSDARG00000057322

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071064 True 5127 mRNA 0.42 3 18565904 18582922

Neighbor

gene id symbol gene type direction distance location
XLOC_036353 si:dkey-30h22.11 coding downstream 28022 18506141 ~ 18537882 (-)
XLOC_036352 zgc:153738 coding downstream 105113 18450052 ~ 18460791 (-)
XLOC_036351 obscna coding downstream 167117 18369177 ~ 18398787 (-)
XLOC_036350 dmap1 coding downstream 198168 18354485 ~ 18367736 (-)
XLOC_036349 rnf220b coding downstream 249422 18242505 ~ 18316482 (-)
XLOC_036355 AL844185.2 coding upstream 1771 18584693 ~ 18584807 (-)
XLOC_036356 NA coding upstream 11145 18594067 ~ 18599356 (-)
XLOC_036357 cpox coding upstream 18330 18601252 ~ 18613948 (-)
XLOC_036358 stap2b coding upstream 67492 18650414 ~ 18667693 (-)
XLOC_036359 NA coding upstream 188685 18771607 ~ 18773009 (-)
XLOC_036336 NA non-coding downstream 780993 17777860 ~ 17784911 (-)
XLOC_036335 NA non-coding downstream 904710 17659597 ~ 17661194 (-)
XLOC_036332 BX465215.1 non-coding downstream 1313550 17252239 ~ 17252354 (-)
XLOC_036322 NA non-coding downstream 1952241 16609622 ~ 16613663 (-)
XLOC_036374 NA non-coding upstream 1402920 19985842 ~ 19989233 (-)
XLOC_036380 NA non-coding upstream 1824731 20407653 ~ 20413849 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03549798_03555625 TMEM47, TMEM47.L coding CI01000010 null 3549798 ~ 3555809 (+)