XLOC_036374


Basic Information

Item Value
gene id XLOC_036374
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19985842 ~ 19989233 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072025
cgaccgcaaacaagcgccatcaccacagacaacgcctGACTCGTCTCTTCACCTaacgaattcatcctcgtacaagactgaagtaaaggtgaaatgactgtgacgttaagattttattctttggtgttcaggtgtacctgataatagctgaagtgtgagccacagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaagaagttccaccagtactTCCAGtcgtatcttattccttggagggtcgagtggtcattGGACCTCACCTGGATCTAACGactgactttggatctggtctgaaactgaagtatgctgaagatgtcttttgcactctggaatttaagGGGTGTGTTGCAGACtcaatttgtttgtctgtgctggagaccagagggaaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtgctttttgggcaccagtttggagatggaagacagacgaagtcaaagaagcagggaagacacatcaaccagcaagtgtgtaaaattatcaggaaaatgattcatgatatatatatatatatatatatatatatatatatatatatatatatatatgagaaagagagagagcgcactctgaagcactgctttttatatgtatgctacatatgatgtcagatttttttgttattatgttCTTAAgattttttgaggcttcaccttcaccttttgaaagttttctgaaatgcttacacagatgtcattaagctgttaaataaatctgtaaaa
>TCONS_00072026
TCGTCTCTTCACCTaacgaattcatcctcgtacaagactgaagtaaaggtgaaatgactattttattctttggtgttcaggtgtacctgataatagctgaagtgtgagccacagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaagtcttattccttggagggtcgagtggtcattGGACCTCACCTGGATCTAACGactgactttggatctggtctgaaactgaagtatgctgaagatgtcttttgcactctggaatttaagGGGTGTGTTGCAGACtcaatttgtttgtctgtgctggagaccagagggaaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtgctttttgggcaccagtttggagatggaagacagacgaagtcaaagaagcagggaagacacatcaaccagcaagtgtgtaaaattatcaggaaaatgattcatgatatatatatatatatatatatatatatatatatatatatatatatatatgagaaagagagagagcgcactctgaagcactgctttttatatgtatgctacatatgatgtcagatttttttgttattatgttCTTAAgattttttgaggcttcaccttcaccttttgaaagttttctgaaatgcttacacagatgtcattaagctgttaaataaatctgtaaa
>TCONS_00072027
gttcaggtgtacctgataatagctgaagtgtgagccacagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaaggtaatgttgaacCTTCCtcgtttttattagatttttaaatgtcaggtttttcacaaatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtactTCCAGtcgtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtctgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaacaaatgtaattattcACAAACATCTCTAATTTAGTCTTTCTTTCCCCAGCAGTGCAACATCAAACAAAcagtcttattccttggagggtcgagtggtcattGGACCTCACCTGGATCTAACGactgactttggatctggtctgaaactgaagtatgctgaagatgtcttttgcactctggaatttaagGGGTGTGTTGCAGACtcaatttgtttgtctgtgctggagaccagagggaaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtg
>TCONS_00072028
gtacaagactgaagtaaaggtgaaatgactgtgacgttaaggtgtacctgataatagctgaagtgtgagccacagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaaggtaatgttgaacCTTCCtcgtttttattagatttttaaatgtcaggtttttcacaaatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtactTCCAGtcgtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtctgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaacaaatgtaattattcACAAACATCTCTAATTTAGTCTTTCTTTCCCCAGCAGTGCAACATCAAACAAAcagtcttattccttggagggtcgagtggtcattGGACCTCACCTGGATCTAACGactgactttggatctggtctgaaactgaagtatgctgaagatgtcttttgcactctggaatttaagGGGTGTGTTGCAGACtcaatttgtttgtctgtgctggagaccagagggaaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtg
>TCONS_00072029
attgaatcagattcagatattttatcagacgtgttcataaGCTCATAGTCATCAACATGCAATTtgtgtacaagcagtacacgaaccaagcaatatgatgaaatattaatgaattatatgtctGCGTCTAACAATATTATGCAAAATGGAATCGgtttcaggcgaattcgactctttactgttcacttaaaggagccgattcattgaacagaactgactcgactcgaccgcaaacaagcgccatcaccacagacaacgcctGACTCGTCTCTTCACCTaacgaattcatcctcggtgtacctgataatagctgaagtgtgagccacagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaagtcttattccttggagggtcgagtggtcattGGACCTCACCTGGATCTAACGactgactttggatctggtctgaaactgaagtatgctgaagatgtcttttgcactctggaatttaagGGGTGTGTTGCAGACtcaatttgtttgtctgtgctggagaccagagggaaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtg
>TCONS_00072030
gcgccatcaccacagacaacgcctGACTCGTCTCTTCACCTaacgaattcatcctcgtacaagactgaagtaaaggtgaaatgactgtgacgttaaggtaagctctggctttcacttaagttaacgttacggttagtgaccatcatgtacgttaattttgttcactgttacgttaacgttaagttagttaaataactaaactcattatgaaacaagtcttaactgttttattaaatgaggcttctaatacaattcagttgtattattttagtacatattgtatatttctcactggtgttaatgcattGCTAACATTTACaaatgagaactaattgtatattgtcactaactgtagattttattctttggtgttcaggtgtacctgataatagctgaagtgtgagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaaggtaatgttgaacCTTCCtcgtttttattagatttttaaatgtcaggtttttc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072025 False 793 lncRNA 0.39 8 19985842 19989009
TCONS_00072026 False 715 lncRNA 0.37 7 19985843 19988969
TCONS_00072027 False 642 lncRNA 0.38 3 19986746 19988352
TCONS_00072028 False 677 lncRNA 0.38 4 19986746 19988666
TCONS_00072029 False 603 lncRNA 0.42 5 19986746 19989233
TCONS_00072030 True 507 lncRNA 0.35 3 19987351 19988996

Neighbor

gene id symbol gene type direction distance location
XLOC_036373 lpxn coding downstream 8754 19948606 ~ 19977088 (-)
XLOC_036372 trabd2b coding downstream 81718 19801865 ~ 19904124 (-)
XLOC_036371 fam78bb coding downstream 336225 19642199 ~ 19649617 (-)
XLOC_036370 edem3 coding downstream 498515 19469678 ~ 19487327 (-)
XLOC_036369 zgc:92140 coding downstream 518831 19398335 ~ 19467011 (-)
XLOC_036375 rfx2 coding upstream 83754 20072987 ~ 20138251 (-)
XLOC_036376 mllt1a coding upstream 204922 20194155 ~ 20230802 (-)
XLOC_036377 acer1 coding upstream 243188 20232421 ~ 20245892 (-)
XLOC_036378 myo1f coding upstream 261251 20250484 ~ 20291922 (-)
XLOC_036379 adamts10 coding upstream 309136 20298369 ~ 20380750 (-)
XLOC_036359 NA non-coding downstream 1212833 18771607 ~ 18773009 (-)
XLOC_036356 NA non-coding downstream 1386486 18594067 ~ 18599356 (-)
XLOC_036355 AL844185.2 non-coding downstream 1401035 18584693 ~ 18584807 (-)
XLOC_036336 NA non-coding downstream 2200931 17777860 ~ 17784911 (-)
XLOC_036335 NA non-coding downstream 2324648 17659597 ~ 17661194 (-)
XLOC_036380 NA non-coding upstream 418420 20407653 ~ 20413849 (-)
XLOC_036381 BX511253.2 non-coding upstream 425613 20414846 ~ 20414961 (-)
XLOC_036382 BX511253.1 non-coding upstream 458888 20448121 ~ 20455202 (-)
XLOC_036384 BX004774.1 non-coding upstream 852901 20842134 ~ 20844502 (-)
XLOC_036385 NA non-coding upstream 856497 20845730 ~ 20850489 (-)

Expression


Co-expression Network