XLOC_036372 (trabd2b)


Basic Information

Item Value
gene id XLOC_036372
gene name trabd2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19801865 ~ 19904124 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071091
GAATGGCGAAGGGGCAGAATGCTTCCCTTTCGAGACTGCAAATGTGAGCCCATTATCATCACCGGCGGAAAACACTTTATCTGTGCCGTGAAAACCGGAGAAACTTGAAAACAACTGAGGGACCGGAGCTGAGGGCAGCGCGAGGTGTCCTGTGCCCTCTCGTCTCGAAATGAACTGTCAGTCGGGACTGCGATGGTTGGTAACTTTATGCGCTTTCTTTCAAGTGGGCTCTGCCCGGGACACGCACGAGAGCACGCGGCAATGTGACAAGCCCGTATCGCAGAAAGACATGAACTCCTTCCTGTGGACCGTGAAGCGGCCTCGTCCTTTTCCACCGTCGTATCTGTTTGGCACAATCCACGTCCCGTACACTCGAGTGTGGGACTATATCCCAGAGAGCTCAAAACGTGCCTTTCAGACCAGCAACAGTGTATTCTTTGAACTGGATCTCACAGATCCTTTAACCATCTCCAAACTCACCAGCTGCCAGCTTCTGCCCAATGGAGAAAACCTCCAGACGCTACTGCCACGGGATCTCTACCGCCGCCTCAAGCGCCACCTGGACTACGTCAAACACATGATGCCCTTCTGGATGACAGCAGACCAGCGCGGCCGAGGACTTTATGCCGACTACCTCTTCAACGCCATTGCGGGGAACTGGGAACGCAAGAGGCCTGTATGGGTGATGCTAATGGTGAACTCGCTGACGGAAGCAGACGTCCGGTCACGGGGAACCCCCGTGCTCGACCTGTTCTTGGCACAGGAGGCAGAGCGTCTCGGGAAGCAGACAGGTGCTGTGGAGAGGGTGGAGGAACAGTGCCATCCCCTGAATGGACTGAACTTCTCACAGgtgTTGTTTGCCCTGAACCAGACTCTACTGCAGCATGAGAGTTTGCGTGCAGGCATTCTGCAGGGCACCTTTACTACAGAGGACCTCATTGCACACTACAATTGTGGAGACCTCAACTCCATCATCTTCAATCATGACACATCCCAGcTTCCGCATTTCATCAACAGTTCTCTGCCAGATCATGAGCGCTTGACGGCGCAGCAGATCGACAGTTACCTGCGGCAGGAGCTCATTTACAAACGCAATGAACGAATGGCCCGCCGCGTCTCCGCCCTCCTTCAGAGAAACCCCAACCAGAGCTTCTTTTTCGCTTTTGGAGCTGGTCATTTCCTGGGGAATCATAGTGTACTGGACATTCTGCGGCAGGAGGGCTATGAGGTGGAGCACACACCACCACAAGAGCCCATCATACAGAGCTGGTCTGAGCGGGAGGCGACCACACTGAATCCCACCGAAGACAGCTTCGAGTCAGTGACAGAATGGACATCAGAGACTCCTGAGCTGGAGGAGATCAGCCAGGAAGAACTCTCCCATATGCTGCTGCCTGACAGTCTCAGCCAGCTAGAGGAATTTGGCCGCTACAAGCATCCTCGTAAAACCCATCATACGCACAGTCGACCTCGGCTGTTCAGCGACCTGTGGGTGCGCATAGGAGACAGCACGACTCCACACCCAAGCATAAGGATAACCAATGGCTATGTGACGGTGGAGCCTCCTCAGATACGACAGGAACAGCAACAAAGACTCAGAGAAAGACTGAAGCCTCTCAGTGAGCCCACAAACCCCAGCGCACTTGACTCCGCTGCTCCAAACCCAACATATGCGCTGACTTGTTTTTTGGCCTGTCTCATTTCACAACTGCTTTTTGCTTCCTAAAGAGGAACTGGGTCTCTTGGAAGCTCACAATCCAACAAGAATTTTATCTGAGTGACTTCGTCTGTGGTAAAAATAAATGGCAGTTAAGTACATTTAGGTACTGCTTAGATCAATTTTTGGGTGTCTGCCTACAATAAATTAGTTGCCGCAGTATGTAACACAACACGAATGTGAGTAATTCTAATCGTTGCATCTGGTAAAATAGTAGTTGCTAAGAATAACAATAAGAGAAAAGCTAGAACATTTTGTTATACTTATGCAATGTCTCTGGCCAGAGTTGATTCATGAGAATCAGATTGTACTTTTATGTGAATTCCCAGATGACTGTACCCTTTTGCCCCATGAGTGCAGACAGCAAAATATGAATGTCCTTTTTTCTGATGAGTGAAATGGGCAAAAACAAATATACCAAATGATCAGTATGATATAATAGAGACTGCTATTATGTGGTATGGTCACTGGCAGATAACTAAATGACTTAATAGTTCACAGAGATGGTActtatattttgtaaattgtgCATTTGTTCATacagaaattttatatttattatttcatgaaGAGTATATTTTCATGCATTTCTCAAGTATTAAAGTCAACA

Function

symbol description
trabd2b Predicted to enable Wnt-protein binding activity and metalloendopeptidase activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and proteolysis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Predicted to be integral component of organelle membrane and integral component of plasma membrane. Orthologous to human TRABD2B (TraB domain containing 2B).

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0006508 proteolysis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031301 integral component of organelle membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-381 Predicted to enable Wnt-protein binding activity and metalloendopeptidase activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and proteolysis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Predicted to be integral component of organelle membrane and integral component of plasma membrane. Orthologous to human TRABD2B (TraB domain containing 2B).

Ensembl:

ensembl_id ENSDARG00000088816

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071091 True 2327 mRNA 0.49 7 19801865 19904124

Neighbor

gene id symbol gene type direction distance location
XLOC_036371 fam78bb coding downstream 152248 19642199 ~ 19649617 (-)
XLOC_036370 edem3 coding downstream 314538 19469678 ~ 19487327 (-)
XLOC_036369 zgc:92140 coding downstream 334854 19398335 ~ 19467011 (-)
XLOC_036368 colgalt2 coding downstream 406755 19364568 ~ 19395110 (-)
XLOC_036367 rgl1 coding downstream 459754 19283143 ~ 19342111 (-)
XLOC_036373 lpxn coding upstream 44482 19948606 ~ 19977088 (-)
XLOC_036374 NA coding upstream 81718 19985842 ~ 19989233 (-)
XLOC_036375 rfx2 coding upstream 168863 20072987 ~ 20138251 (-)
XLOC_036376 mllt1a coding upstream 290031 20194155 ~ 20230802 (-)
XLOC_036377 acer1 coding upstream 328297 20232421 ~ 20245892 (-)
XLOC_036359 NA non-coding downstream 1028856 18771607 ~ 18773009 (-)
XLOC_036356 NA non-coding downstream 1202509 18594067 ~ 18599356 (-)
XLOC_036355 AL844185.2 non-coding downstream 1217058 18584693 ~ 18584807 (-)
XLOC_036336 NA non-coding downstream 2016954 17777860 ~ 17784911 (-)
XLOC_036335 NA non-coding downstream 2140671 17659597 ~ 17661194 (-)
XLOC_036380 NA non-coding upstream 503529 20407653 ~ 20413849 (-)
XLOC_036381 BX511253.2 non-coding upstream 510722 20414846 ~ 20414961 (-)
XLOC_036382 BX511253.1 non-coding upstream 543997 20448121 ~ 20455202 (-)
XLOC_036384 BX004774.1 non-coding upstream 938010 20842134 ~ 20844502 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_02847074_02911612 NA coding CI01000010 null 2847074 ~ 2911612 (+)
bowfin (Amia calva) AMCG00010344 trabd2a,LOC106513543 coding CM030129.1 CM030129.1 25445072 ~ 25445484 (+)