XLOC_036375 (rfx2)


Basic Information

Item Value
gene id XLOC_036375
gene name rfx2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 20072987 ~ 20138251 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071094
CGCGTATGTGTGCCGCTCGCCGCGGGAATCAACCCGGTGCAGAGCGCGTTAGGGGGAGGGGCTAACACCGGACTCCTCCCACTCTCGCTTTTTAGCCCTTGACGTATGAAGAGGACGGTAGCAACAGTTGCCTCGAGACCCCCGCTCGCCATAGTGACTGTAGTCGTGGAGACAGTTACTTACCAACGGGAGCAACActcagcaacagcagcagcagcagcaactggaggagagagagagggaaaagaaCAGTAAAGCCAGGGCAGATCTAAGCACAAGGCTGAGGAGAAACGATGCAGCGGTCAGAAGGGGGCTCAGAGACGCCATCCACCGTGGCGTTAAGAACATCCACTTCAGCCCAGGCACCAGTGGTTCAGCCTGTTCCCGCTTCGCAACAACGTGTTTTAGTTCAGGCCACCGGTTCTTCCCAGAAGGGAGCTCAGGTGCAGCAGTTACCAGTGCCTAGAGTGCAACAGGTCCctcagcaggTACAGCAGGTTCAGCATTACCATTCCCAGCAGGTGCAATATGTGGAGGGTGCAGAGGCTGTCTACCCCAATGGCACAATTCGTGCTGCATACTCTTATAACCCAGAGTCCCAGCTATATGGTCAGGGCAGTGGAAGTGCCTATTTCGACTCTCAGGCGGGTGGTGCTCAGGTAACCACAGTCGTCTCTTCTGGTGGAGTGCCCACTCATGGCATGGTGGGAATTGCTATGGATGTGGGTGGCAGTCAGATCATTTCCAGCGGCAGCGCCTACCTGATCCACGGCGGGATGGAAGGTGGCCGCCACCACACCTCTCACTCCTCACGCTCATCATCTGCAATGCTTGAAATGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGCTCAACAGCCATttGCAGTGGCTGCTGGATAATTATGAGACGGCTGAAGGTGTGAGTCTGCCGCGGAGCTCTCTCTATAACCACTATCTGAGACACTGTCAGGAGCAAAAGCTGGATCCAGTTAATGCAGCCTCTTTTGGCAAACTCATCCGCTCTGTCTTCATGGGCCTTCGCACGCGCCGGCTTGGTACCAGggggAACTCAAAATACCATTATTATGGCATTCGTCTGAAGCCGGACTCGCCTCTCAACCGTATGCAGGAGGACACGCAGTACATGGCAATGAGACAAACACCTGTCCATCAGAAGCAGAGGTTTAAGCCCTTTCACAAGATGGATGGGATGGGGGACAGTCTGAACAGTGGCTCCCAGCATTTGTCCAGCACCCCTGAGCAGAGCGTGGCGGCCCAGTGTCAGCATCACCAGCAGTACATTGATGTGTCTCATGTCCTTCCTCCCTTCCCTTCTCTTGATCTGGGCTCCTGTCCTCTGCCGGAGTCCATCAGCATGACTGATGTGAAAAAACTACAGAGCAGCTACAGGATTCACTGTGAGGCTACTCTGGATGTTGTGATGAACCTGCAATTTCATCTCATAGAGAAGCTGTGGCAGACCTTTTGGCAttcaacagcgccctctagtgacgGAGCCACTACCATACCTAACAGCGAGGAGGATGTGGAGGACATCAGAGGATTCCCCAGAGACAAGCTGATCACTCTGTGTAAATATGAGCCAATTAAACAGTGGATGAGGAGCTGTGATCACATCCTGTATCAGGCACTGGTGGAGATCCTTATCCCTGATGTGCTGCGGCCTGTTCCCAGCACCCTCACTCAAGCCATCAGAAACTTCGCTAAGAGTCTAGAGGGCTGGTTGACCTCAGCCATGACTAACTTCCCTCCGGAGATCATCAGCACTAAgGCTGCAGTAGTGAGTGCATTTGCACAGACCCTGCGTCGCTACACCTCTCTCAATCACCTGGCTCAGGCAGCGCGGGCCGTCCTGCAGAACACCTCCCAGATCAATCAGATGCTCAGCGACCTCAACAGAGTAGACTTTGCCAACGTGCAGGAGCAGGCGTCCTGGGTCTGCCAGTGTGATGAGTCTGTTGTTCAGCGTTTAGAGCTGGACTTTAAGGCGACCCTGCAGCAGCAAAGCTCTCTGGATCAATGGGCCGCATGGCTGGATAACGTCGTCAATCAGGTGCTCAAACCCTATGATGGCAGTCTGAGCTTCCCTCGTGCCGCACGCCAGTTTCTGCTCAAGTGGTCCTTCTACAGCTCTATGGTGATCAGAGATCTGACTCTGCGCTCGGCCGCCAGTTTCGGCTCCTTCCACCTCATCCGTCTGCTCTATGATGAGTACATGTTTTATTTGGTGGAACACCGTGTGGCTCAGGCAACCGGAGAGACTCCAATTGCTGTCATGGGGGAGtTCAGTGACCTCAGTTCATTAATGCCATCCCTCAAGGAGCAAGACACTTCATTCTCAGACGACATGACCAGCGATGGAGACATGTCGAGGATGAGCGAGAGAAGCCTGACTGAACCAGCggtaaagagagaaagaatcgaGATCCCTCACTCCCTGCAGGAGATCTAACAGACACAAACGTCATCTCCGTCTTTAGAGTAGGGTCAGCGTGTGTCTCCTTTAGGTTTTCTGCGACTGTGAAGCAAGAATGTGCTGGTTTGGTGGCGTGTGGTTTATTTTTCATGTGCCATAGTCTTCTTTCAGTGCCTTAGATGAGAAAAGAAACACTAGAGCTTTCTCTTTGACCTTCTGTCGTTTTCCTCGGCCGTGCCTCCAACCGCAGGATGAATGTATCGTCTATGAACCTCAGATGTCTAAAGCACCTTTTTAAACGGCAGCcacttttattttttccctctctcAGACGTAGATGCAACCTGCTGACCCCAAAGCCGCCCGTTTTCAGCCTCCACCCAAAACTTGCTGCAACACGAGAAAAGCCTTCAGAAGCATCCGTTTGATGAGAGCTCTGGCCGTATGAGATGCCTAGTCTATACCTCAAAGCATTCGTAGGTTTAATCAATTGACGTCCAGCTTTTATGATGTTTTCTAATGAGATGAGTGGATTTGGAAGCCCCGCGCTGTTGTTGGAAAGCTCTCGGGATGTATATAAACAGATTCCGTTGGTCGTTATTGCTCGAGCAAAGCAGAAATGGTTTGTGAAATTAGTTTTGTAGCTATTTGACGAGTTCTTAGATGTTTGCAGtagttcaaataaaaaaagaggtgGTATGTTGATATATTGATATGTTGTCTGTACACGAGGCCTTCTGAAGTAACTGGAAAAGAGTCACAACGTTGTGAATAGTTTGTGTGTTGCTTATTATAAAACCGACCAGAGAtgattttaaaagataaaataactgTAACCTATTTAAGTAGATATCGTGTGTACGTGATagcaaaaaaacatgttttctagAGGAGAATAGAGAACCCTTAATAGACGGAATATGCAGATTCTTACAGAGACGCCTCATCACTTGGTGCTGTACAACCTTTCCTGCTTTTAGTGGCCAATGGGCTGGTTTTCTGGAGATGTTTGTGACTATATTGTGCTGGGATCTTTACTGGTGCCTGGTAGCGGCCCGTAACGCGGCTCTCTGCTCTTCACAAAGATCAGCTTCATTTCTActcgctgtgtgtttgtgtttgttttctggaAGTGATTGGCTGTGAGCGTCAGGCTCTGTACTTTAATGCCTGTCATGGTTTTGTTGTGTGCTTTTGGGAAAggagtttgtttttttgtaatgttgtttCAAGGCTTCTGTCTAAGAATTATTTTTATGGAGGTAGATGCAATTCTTCTCACTACTATATTGATCCCTTATTTTTGTGTCTTTAAAAAAACCTGGTTATTTAGCATCGGCCGCTTAGTTTGATTGTATTTTGTACTGGTAAGACGTCGATTAAATTTGTGTAAACCACTTTTGTGTCTGTTATAAATTCACACAGacttggtttgttttttttcatatatatatagtaaatctTTTTTGAATA
>TCONS_00071095
ctcagcaacagcagcagcagcagcaactggaggagagagagagggaaaagaaCAGTAAAGCCAGGGCAGATCTAAGCACAAGGCTGAGCTCCCGTTCAAGGATGTTACAGATGAGGCCTGTCAAAGTGGGAGCGTGTTTGTCGCGCTGTGTGACGGGTCTCTCAGCTGAAGGGGGTAAAACAGTGGAGCGACATGTCTGTCAGGAGAAACGATGCAGCGGTCAGAAGGGGGCTCAGAGACGCCATCCACCGTGGCGTTAAGAACATCCACTTCAGCCCAGGCACCAGTGGTTCAGCCTGTTCCCGCTTCGCAACAAgTACAGCAGGTTCAGCATTACCATTCCCAGCAGGTGCAATATGTGGAGGGTGCAGAGGCTGTCTACCCCAATGGCACAATTCGTGCTGCATACTCTTATAACCCAGAGTCCCAGCTATATGGTCAGGGCAGTGGAAGTGCCTATTTCGACTCTCAGGCGGGTGGTGCTCAGGTAACCACAGTCGTCTCTTCTGGTGGAGTGCCCACTCATGGCATGGTGGGAATTGCTATGGATGTGGGTGGCAGTCAGATCATTTCCAGCGGCAGCGCCTACCTGATCCACGGCGGGATGGAAGGTGGCCGCCACCACACCTCTCACTCCTCACGCTCATCATCTGCAATGCTTGAAATGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGCTCAACAGCCATttGCAGTGGCTGCTGGATAATTATGAGACGGCTGAAGGTGTGAGTCTGCCGCGGAGCTCTCTCTATAACCACTATCTGAGACACTGTCAGGAGCAAAAGCTGGATCCAGTTAATGCAGCCTCTTTTGGCAAACTCATCCGCTCTGTCTTCATGGGCCTTCGCACGCGCCGGCTTGGTACC
>TCONS_00071096
TATGGAAGCAGACACATTTAACAATCTTCTCCTTCTTTACCTTCTCCTAGTCTGTCTTTCAAAGGAGAAACGATGCAGCGGTCAGAAGGGGGCTCAGAGACGCCATCCACCGTGGCGTTAAGAACATCCACTTCAGCCCAGGCACCAGTGGTTCAGCCTGTTCCCGCTTCGCAACAAgTACAGCAGGTTCAGCATTACCATTCCCAGCAGGTGCAATATGTGGAGGGTGCAGAGGCTGTCTACCCCAATGGCACAATTCGTGCTGCATACTCTTATAACCCAGAGTCCCAGCTATATGGTCAGGGCAGTGGAAGTGCCTATTTCGACTCTCAGGCGGGTGGTGCTCAGGTAACCACAGTCGTCTCTTCTGGTGGAGTGCCCACTCATGGCATGGTGGGAATTGCTATGGATGTGGGTGGCAGTCAGATCATTTCCAGCGGCAGCGCCTACCTGATCCACGGCGGGATGGAAGGTGGCCGCCACCACACCTCTCACTCCTCACGCTCATCATCTGCAATGCTTGAAATGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGCTCAACAGCCATttGCAGTGGCTGCTGGATAATTATGAGACGGCTGAAGGTGTGAGT
>TCONS_00071097
GCCTCGAGACCCCCGCTCGCCATAGTGACTGTAGTCGTGGAGACAGTTACTTACCAACGGGAGCAACActcagcaacagcagcagcagcagcaactggaggagagagagagggaaaagaaCAGTAAAGCCAGGGCAGATCTAAGCACAAGGCTGAGGAGAAACGATGCAGCGGTCAGAAGGGGGCTCAGAGACGCCATCCACCGTGGCGTTAAGAACATCCACTTCAGCCCAGGCACCAGTGGTTCAGCCTGTTCCCGCTTCGCAACAAgTACAGCAGGTTCAGCATTACCATTCCCAGCAGGTGCAATATGTGGAGGGTGCAGAGGCTGTCTACCCCAATGGCACAATTCGTGCTGCATACTCTTATAACCCAGAGTCCCAGCTATATGGTCAGGGCAGTGGAAGTGCCTATTTCGACTCTCAGGCGGGTGGTGCTCAGGTAACCACAGTCGTCTCTTCTGGTGGAGTGCCCACTCATGGCATGGTGGGAATTGCTATGGATGTGGGTGGCAGTCAGATCATTTCCAGCGGCAGCGCCTACCTGATCCACGGCGGGATGGAAGGTGGCCGCCACCACACCTCTCACTCCTCACGCTCATCATCTGCAATGCTTGAAATGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGC

Function

symbol description
rfx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within Kupffer's vesicle development and determination of left/right symmetry. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; mesoderm; neural plate; neural tube; and pronephros. Orthologous to human RFX2 (regulatory factor X2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050227-4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within Kupffer's vesicle development and determination of left/right symmetry. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; mesoderm; neural plate; neural tube; and pronephros. Orthologous to human RFX2 (regulatory factor X2).

Ensembl:

ensembl_id ENSDARG00000013575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071094 False 3935 mRNA 0.49 18 20072987 20138251
TCONS_00071095 False 913 mRNA 0.54 7 20096285 20138054
TCONS_00071096 False 639 mRNA 0.53 6 20096420 20118549
TCONS_00071097 True 675 mRNA 0.55 5 20097878 20138122

Neighbor

gene id symbol gene type direction distance location
XLOC_036374 NA coding downstream 83754 19985842 ~ 19989233 (-)
XLOC_036373 lpxn coding downstream 95899 19948606 ~ 19977088 (-)
XLOC_036372 trabd2b coding downstream 168863 19801865 ~ 19904124 (-)
XLOC_036371 fam78bb coding downstream 423370 19642199 ~ 19649617 (-)
XLOC_036370 edem3 coding downstream 585660 19469678 ~ 19487327 (-)
XLOC_036376 mllt1a coding upstream 55904 20194155 ~ 20230802 (-)
XLOC_036377 acer1 coding upstream 94170 20232421 ~ 20245892 (-)
XLOC_036378 myo1f coding upstream 112233 20250484 ~ 20291922 (-)
XLOC_036379 adamts10 coding upstream 160118 20298369 ~ 20380750 (-)
XLOC_036380 NA coding upstream 269402 20407653 ~ 20413849 (-)
XLOC_036359 NA non-coding downstream 1299978 18771607 ~ 18773009 (-)
XLOC_036356 NA non-coding downstream 1473631 18594067 ~ 18599356 (-)
XLOC_036355 AL844185.2 non-coding downstream 1488180 18584693 ~ 18584807 (-)
XLOC_036336 NA non-coding downstream 2288076 17777860 ~ 17784911 (-)
XLOC_036381 BX511253.2 non-coding upstream 276595 20414846 ~ 20414961 (-)
XLOC_036382 BX511253.1 non-coding upstream 309870 20448121 ~ 20455202 (-)
XLOC_036384 BX004774.1 non-coding upstream 703883 20842134 ~ 20844502 (-)
XLOC_036385 NA non-coding upstream 707479 20845730 ~ 20850489 (-)

Expression


Co-expression Network