XLOC_036379 (adamts10)


Basic Information

Item Value
gene id XLOC_036379
gene name adamts10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 20298369 ~ 20380750 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071103
ATTTATGTTCTCCATTTGTACACGTCTCAGAACAGCCCGTCCTCCACCTCTGACTCTTGAGAGACGAAGCGTCAGGATCCAGTGGAATTGAAGCTGCCATGGTTCTGGAAATCTGTGCGTCACTTTGGTGAGCGTTGGGCCGTCAGAGGGCAGAAGACATGTTGGGACAGAGGGCTGGGCACCCCATTGAAGCTTGCTGTAGTAACCATGGAAACGGTGTGGAGGAGTTTGGCCTGTGTTGGCATCATGGCCATGGTTGCCAGTGGAGGGGCGGAGAGTTGGAGCGATGAGAAGTTTGCACAGTCTCAAGCTGAGTTTCTGTCCAGCTTGGGCCAGTATGAGATTGCCATCCCAGTGCGTGTGGGGCCTCATGGGGAAACTCTTTCGGAAGAGGAGACGTCTCACGGGACTGTCCGCCACCGGCGCAGCACCGAAACACAGAGCGCTCCAGAGCCGCAGCTGTACTATCAGCTCTCCACTTCCAGCACTGATCTGCTGCTCAACCTCACGCTGCAGGGAGGACTGCTCTCGCGCCAGTTTCGTGTCGAATACTGGAAGAGGGGCCGCTTGGCCTGGAGCCACCCATACTTGCCCAGCTGCCACTATGTGGGTCACCTGCAGCACCAGCCGCACTCCAGTTCTGTTGCTCTCAGCAACTGTAACGGACTGcaaggGGTCATTGTAGCAGGAGGTGAGGAGTACCTTATTGAACCCCTGGTTTCTGCTAAAAACTTGACTAATGAGGATGGCAGAGAAGGGCGACCACATGTTGTGTACAAACGCTCGTCTCTGAGATATCAGAACATGGACCAGTCCTGTGGAGTTATCGATGAGAAGCCTGGGAAGAGTTATGGATGGTGGCAGAGAACAATAAAACCCTCACCCAACCAGATGGGACGGGGCCAGTTGCCACTGAAACGTTCTGTAAGTCGAGAGCGCTTCGTCGAAACCCTGGTGGTTGCCGACAAGATGATGGTCAGCTATCACGGCCGTCGCGATATCGAGCAGTACATTCTGGCCGTCATGAATATTGTTGCCAAACTGTTCCAGGATTCTAGCCTGGGGAATGCAGTGAACATCGTGGTGACGAGGCTTATTCTGCTGATGGAAGACCAGCCCACGCTAGAGGTAAACCATCATGCAGGGAAGTCTTTAGACAGCTTCTGCAAGTGGCAAAAGTCTATCTTGCACCGGAACGGTCATGGAAATGCCATACCTGACAATGGAATCGCTCACCATGATACAGCAGTTCTCATCACCAGATATGACATCTGCATCTACAAGAACAAACCCTGTGGAACTCTTGGTCTGGCACCTGTTGGAGGTATGTGTGAGCCAGAGAGAAGCTGCAGCATCAATGAAGACATTGGCCTCGCCACTGCTTTTACCATTGCACATGAGATTGGACACACGTTTGGGATGAATCATGATGGTGTTGGCAATGCATGCGGGGTGCGCAGTCAGGAGACCGCCAAACTCATGGCTGCCCACATTACCATGAAGACCAACCCGTTCGTCTGGTCCGCCTGCAGCCGCGATTACATCACCAACTTCCTCGACTCTGGCATGGGTTCCTGCCTCAATAATGTGCCCCCCAAGCAGGAGTTTGTGTACCCCACCACAGCCCCAGGCCAAGCTTATGATGCAGACGAGCAGTGCCGCTTCCAGTACGGAGTGAAGTCTCGTCAGTGTAAATACGGGGAAGTGTGCAGTGAGCTCTGGTGCATGAGTAAAGGCAATCGCTGCATCACCAGTAGCATCCCAGCAGCTGAGGGCACCATTTGCCAGACCAGCACTATCGAAAAAGGGTGGTGCTACAAGAGATTGTGTGTGCCGTATGGAACACGGCCCGAGGGTGTGGATGGTGGGTGGGGCCACTGGTCTCCATGGGAGGAGTGTAGTCGCACATGTGGGGGCGGAGTCTCATCCTCCATTCGTCATTGTGACAGCCCCAGGCCAACGGTTGGAGGGAAATATTGTCTTGGAGAGAGGAAGCGCTTCAGATCCTGCAACATTGATgagtgtCCAGTCGGGTCTCAGGATTTTCGGGAGATTCAGTGCTCAGACTTTGACAGCGTTCCTTTCCGGGGAAAATTCTACACCTGGAAGCCATACAGGGGAGGTGGAGTGAAGTCATGCTCACTGAACTGCCTGGCCGAGGGCTATAACTTCTACACTGAGCGCGCTCCAGCTGTAGTGGACGGCACACCCTGCAGAGATGACTCTCTGGACGTTTGTGTTAATGGGGAGTGTAAGCATGTGGGCTGTGACCGGATCCTGGGCTCAGATGTGCGGGAAGATCGCTGCCGTGTTTGTGGAGGAGATGGAAGCAGCTGCCAGGTCATCGAGGGGGTCTTCAATGACTCCTTGTCTGAAGGAGGTTATGAAGAGGTGGTCAGAATCCCCAAAGGATCTGTATTCATACACATCCAAGAGCTCAACATCTCTCTGAATTACTTGGTGTTGAAGAGCAAAGGGGATCAGTACTTCATCAATGGCAAGCTGACCATCGATACACCGCGCCGCTTCGACATTGCCGGTGGTACCTTCCACTACCGGCGACCCGCCAATGAACCAGAGACCCTGGAAGCTCTCGGACCTACCAACATGACCCTGATCGTGATGGTCTTGGTCCGTGAAGAGAATCCAGGAATTCTATATCGATTCAACCCTCCAGTCAGCAGAGATCCTCTGAGCAGTTACTCTTGGCATTATACATCCTGGTCCCGCTGCTCTGCACTGTGTGCTGGAGGGGTTCAAGTCCAGCAGGTAGTGTGCAAAAAACAAGCTGATCTCTCTGTGGTCTACAATCACTTCTGCGACAAGAAGAACAAGCCCAAAGACAAGAAAAGACCATGCAACCAGGAGCCTTGTCCTCCAACGTGGTGGACAGGAGACTGGTCAGAATGCAGTCGGAGCTGTAATGGAGGAGTTCGCACGCGGGAAGTGCTGTGTAAGAGGAAGATGTCTGTAACAGAAGAGAAAGTGCTGGACGACACAGCCTGCACCACAACACGGCCTTCCGTCACAGAGCCCTGCAACAACCACACCTGCCCACCCGAGTGGCACGCGCTCGACTGGTCAGAGTGTACTCCTGGCTGTGGTCCGGGATACAGGTACAGGGTGATTTTATGTAGAAGTGGAGACAACGGAGAGACGCTGCCAGAGTCTGAGTGCCCGAAACAAAGCCGCCCGACCACCAGAGTGCGCTGTAACATACAGCGGTGCCCACCACCTCAGTGGGTCGCAGGTCCCTGGGGAGAGTGTTCTGCGAGGTGTGGAATGGGTCAGGAGATTCGTTTTGTTCAATGTCTGACACACACTGGCCAGCCGTCCAATGAGTGCCCTGAGTCTCATCGTCCAGCCTTCATGCAGCAGTGCAAGAGCAAGTGCGACCACAGCGGCCCTACAGACAACCCTGAAGAGTGTAAAGATGTGAACACAGTGGCGTACTGCCCCCTGGTGCTCAGGTTCAAATTCTGCGGCCGTGCATATTTCAGACAGATGTGCTGCAAAACCTGCCAAGGACactgacctctctctctctcctccatactcaaacacatgcacacagttatttttctatgtctctctctctctcaccctgGTTTTCTTCCTCTCCGCCCTCCCATCTTCTTGCATGGCCAAAACCGCCCATGCTCAGCATTCCACTGGAGGAGCGCAGTCAACCACTTGCAGGCTGACATCACTGAGGGAGAAAGCATGGGGgaaagaagagaaagagagagaaatgcgGAAAGAACGAGAGAGAATGTTTCTCTCCCTCCGACCAGCTGCTTTGGCACTGCTGCTGTGAAAACCAGTCTGTCCAAAAGACCTCTGTCAGTCTTCGTAAGCTCTTCCGCATGGTGCTCTGGGTCGTCACTTGTCAAGCAGAGAAGTGTTTGTGTGAGCTGTCACACCTGTAGTTCTCAGTGAGTAATAGTCATCTAATGTGATAAAAGATTCATTTACTGA

Function

symbol description
adamts10 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS10 (ADAM metallopeptidase with thrombospondin type 1 motif 10).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-081104-414 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS10 (ADAM metallopeptidase with thrombospondin type 1 motif 10).

Ensembl:

ensembl_id ENSDARG00000075188

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071103 True 3978 mRNA 0.53 24 20298369 20380750

Neighbor

gene id symbol gene type direction distance location
XLOC_036378 myo1f coding downstream 6447 20250484 ~ 20291922 (-)
XLOC_036377 acer1 coding downstream 52477 20232421 ~ 20245892 (-)
XLOC_036376 mllt1a coding downstream 67567 20194155 ~ 20230802 (-)
XLOC_036375 rfx2 coding downstream 160118 20072987 ~ 20138251 (-)
XLOC_036374 NA coding downstream 309136 19985842 ~ 19989233 (-)
XLOC_036380 NA coding upstream 26903 20407653 ~ 20413849 (-)
XLOC_036381 BX511253.2 coding upstream 34096 20414846 ~ 20414961 (-)
XLOC_036382 BX511253.1 coding upstream 67371 20448121 ~ 20455202 (-)
XLOC_036383 si:ch211-133l5.7 coding upstream 451834 20832584 ~ 20838342 (-)
XLOC_036384 BX004774.1 coding upstream 461384 20842134 ~ 20844502 (-)
XLOC_036359 NA non-coding downstream 1525360 18771607 ~ 18773009 (-)
XLOC_036356 NA non-coding downstream 1699013 18594067 ~ 18599356 (-)
XLOC_036355 AL844185.2 non-coding downstream 1713562 18584693 ~ 18584807 (-)
XLOC_036336 NA non-coding downstream 2513458 17777860 ~ 17784911 (-)
XLOC_036385 NA non-coding upstream 464980 20845730 ~ 20850489 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_02584071_02625169 ADAMTS10 coding CI01000010 null 2584071 ~ 2625959 (+)
bowfin (Amia calva) AMCG00006188 adamts10,LOC106584371,LOC108439663 misc CM030142.1 CM030142.1 17662190 ~ 17735084 (+)