AMCG00006188 (adamts10,LOC106584371,LOC108439663)


Basic Information

Item Value
gene id AMCG00006188
gene name adamts10,LOC106584371,LOC108439663
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17662190 ~ 17735084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006188
TGGTATGagactgtattgtattgtgtatccTCAGCTGCCTTCCTGTCCAGCCTGGATGAATATGAAATTTCCATCCCAGTGCGTGTGGGGCCGGGGGGGGGGCCTCTTagtggggaggaggaggaggaagaggggcggcggcggcggcggcgcaGTTTTGATGCAGAGCTGGCGGACAGGCAGCTCTTCTACCAAGTGGCTGCCCCACACACCAACTTTCTGCTCAACCTGACGCTGCACTCAGGGCTGCTGTCGGAGCGCTTCAGCGTAGAGTACTGGAGGAGGGGGCGGCTGGCCTGGAGACACCCCTACTCCCCACACTGCCACTATGTTGGCCACATCCAGCACAGACTGGACACCAGCAAGGTGGCACTAAGCAACTGCAATGGCCTGCAGGGGGTGATAGTGGCCGGAGATGAGGAGTACTTCATTGAGCCCTTGACTTTGGCAGACAATCTCACCAGTtatgaggagagagaggggcgccCCCATGTGGTTTACAAGAGATCGTCACTCCGACACCAGTACATGGACCAATCGTGCGGAGTGATTGATGAGAAGCCGGGCAAGGGGCTGCCCTGGTGGTTGCGGAACTTGAAGCCCTCACCCAATCAGATGCCTCGTGGCCAGCTGCCCCTGAAGCGCTCTGTCAGTAGGGAGCGCTACGTGGAGACGCTGGTGGTGGCGGACAAAATGATGGTGGGCTACCACGGTCGCAGGGACATTGAGCAGTACATCCTTGCCGTCATGAATATTGTTGCCAAACTGTTCCAGGATTCTAGTCTGGGGAACGCAGTGCACATCGTGGTGACAAGACTCATCCTGCTCACAGAGGACCAGCCAACATTAGAGATAAACCATCATGCGGGCAAGTCCCTGGACAGCTTTTGCAAGTGGCAGAAATCCATCCTGAACCGCAACGGCAATGGAAATGCCATTCCAGACAACGGGATAGCTAACCATGACACAGCAGTGCTCATCACAAGgtatgacatttgcatcTACAAGAACAAGCCCTGTGGAACACTTGGTCTGGCCCCAGTGGGGGGGATGTGTGAACCAGAAAGGAGCTGCAGTATCAATGAAGACATCGGCTTGGCCACGGCGTTCACCATCGCCCATGAGATTGGACACACGTTTGGGATGAACCACGACGGGGTGGGCAACGCTTGTGGCTCCCGCAGCCAGGAGACGGCAAAATTGATGGCTGCTCACATCACCATGAAGACCAATCCCTTCGTCTGGTCCGCCTGCAGCCGTGACTACATCACCAACTTCCTAGACTCAGGAATGGGGACCTGCCTGAACAATGTGCCGACCAAGCAGGAGTTTGTGTACCCCACCACTGCCCCTGGCCAGGCCTACGACGCTGATGAACAGTGCCGTTTCCAGTACGGGGTCAAATCTCGCCAGTGTAAATACGGGGAGGTGTGCACGGAACTGTGGTGCATGAGCAAGAGCAACCGCTGTATCACCAGCAGCATCCCTGCTGCGGAAGGAACCATCTGTCAAACCAACACAATTGAAAAAGGATGGTGCTATAAAAGGGAGTGCGTGCCCTTTGGGACACGCCCAGAGGGTGTCGATGGTGGGTGGAGTCTCTGGTCACCATGGGAAGAGTGCAGCCGCACCTGTGGGGGTGGAGTCTCCTCATCTATCCGTCACTGTGACAGTCCCAGACCAACTATTGGTGGAAAGTACTGTCTGGGAGAAAGGAAACGGTTCAGATCCTGTAATATTGATGAATGCCCTGCTGGTTCGCAAGATTTCCGGGAGATTCAGTGCGCAGACTTTGACAGCGTGCCTTTCCGAGGGAAATACTACACTTGGAAGCCGTACCGGGGAGGTGGTGTGAAGTCCTGCTCCCTTAACTGCCTGGCAGAGGGCTACAACTTCTACACTGAGCGCGCCCCCGCGGTGGTGGATGGCACACCCTGTCGTGAAGACTctctggatgtgtgtgtgaatggggACTGCAAGCATGTGGGTTGTGACCGCATCCTGGGCTCGGACACCAGGGAGGACCGCTGCCGAATCTGTGGGGGCGACGGCGGCAGCTGCGAGGTCATTGAGGGCGTCTTCAACGACTCCCTGCCAGAAGGA
>TU197184
CAAAACGCAAGGCGGGCAGTGACTGCTTTGAGACTCAGCTCcagtggaaaaaagaaaacacgatGTGCAAGAGAGCAGGGATCTTTTAAGCGAAACGTCCAGGAAGGGAACAGACGGCAGTTTTTTCTTATTGTAACAACCTGCTGCTGCCGAGgacagacaggacaggacaCGAGTAAGgAAGGCCTGTTTGATTCTGATTATCACATGCTGAAGCTATTACAACATTAGACCCACGTTGCCCtctgtaaatataatatatatatacagagagagagaaagagaagacgGTGCAAGAGCAAAAGGTGCTTCCCATAGACAGACTGTTGACAAAGGAAGTGACTGTCTACTGTCATGGCACAGAAGAACACTGGGTCATCTCCGTGAGCAGACGTCAGAGGCCAGAAGACATGTTGGGACAGAAGGCCTGGGACAGCACTGACGCTAGCAGTAGTAACCATGGAAACGGTATGGAGGACTTTGGCCTGCGTTGTTGCCATCGCCATGGTTGCCACAGAAGTCGCCGAAAGTCTAACTGCTGAAAAATTTCAGTCACAAGCTGCCTTCCTGTCCAGCCTGGATGAATATGAAATTTCCATCCCAGTGCGTGTGGG

Function

symbol description
adamts10 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS10 (ADAM metallopeptidase with thrombospondin type 1 motif 10).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 10-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08625 ADAMTS10; a disintegrin and metalloproteinase with thrombospondin motifs 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006188 True 2103 mRNA 0.57 15 17699979 17735084
TU197184 False 614 lncRNA 0.48 3 17662190 17700067

Neighbor

gene id symbol gene type direction distance location
AMCG00006136 NA coding upstream 143357 17511902 ~ 17518833 (+)
AMCG00006150 NA coding upstream 540685 17104337 ~ 17121505 (+)
AMCG00006151 NA coding upstream 560329 17095682 ~ 17101861 (+)
AMCG00006130 NA coding upstream 585926 17070040 ~ 17076264 (+)
AMCG00006125 dapk3 coding upstream 744210 16908516 ~ 16917980 (+)
AMCG00006191 NA coding downstream 53899 17788983 ~ 17811459 (+)
AMCG00006189 thop1,mepd coding downstream 116955 17852039 ~ 17877059 (+)
AMCG00006187 NA coding downstream 144899 17879983 ~ 17905624 (+)
AMCG00006162 LOC106613602 coding downstream 213439 17948523 ~ 17960210 (+)
AMCG00006164 NA coding downstream 269493 18004577 ~ 18008371 (+)
G156521 NA non-coding upstream 90658 17567559 ~ 17571532 (+)
G156509 NA non-coding upstream 114829 17535631 ~ 17547361 (+)
G156506 NA non-coding upstream 137440 17523234 ~ 17524750 (+)
G156440 NA non-coding upstream 320034 17332536 ~ 17342156 (+)
G156430 NA non-coding upstream 490410 17159577 ~ 17171780 (+)
G156567 NA non-coding downstream 39581 17774665 ~ 17777870 (+)
G156598 NA non-coding downstream 107055 17842139 ~ 17843976 (+)
G156671 NA non-coding downstream 423756 18158840 ~ 18223148 (+)
G156769 NA non-coding downstream 1007518 18742602 ~ 18749749 (+)
G156771 NA non-coding downstream 1021842 18756926 ~ 18757205 (+)
AMCG00006149 NA other upstream 534557 17123205 ~ 17127633 (+)
G156327 NA other upstream 1033008 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 1516952 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 1595292 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 1626221 16032892 ~ 16035969 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 11049 17746133 ~ 17764228 (+)
G156640 NA other downstream 238657 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 455140 18190224 ~ 18356589 (+)
AMCG00006174 NA other downstream 743044 18478128 ~ 18480087 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036379 adamts10 coding NC_007119.7 CM002892.2 20298369 ~ 20380750 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_02584071_02625169 ADAMTS10 coding CI01000010 null 2584071 ~ 2625959 (+)