G156440


Basic Information

Item Value
gene id G156440
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17332536 ~ 17342156 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU197041
TTGCCAAGTGAAACtgacaaaaccaacaaaaaaaaaaagttgtagcTAAAAGGCTTTGGCAGCACCGCAGTTCAGAGCCTGGTCATCTCGTCGATCGCGGCGTCGGGTCTTACTATTTATCATCCATTTCTCTTCGCAAAGAAATAATCCCTGGTCTTCGAGGGGAAATAAACACGggggatttaaaaaacagtccGGTGCCAGAACAGAGGCTTCAGTTCGTTGCAAAGACCCAGTTTCAAGagtgcatgtgtgtttgtgtggcgCTCAGTGGGAATGAAGATGGGACTGGTTACGGGCAGACTGTAAGTCCTCAGTCAGGAGCGACCGAAGCATCCATCTAATTACATCTTGGAATATCCACAGCACGACAGACGGACTGTGAAAAAAAGTGTTGCTTTTATTCCACGGACAAGTACACAGGAGGGTaaaaacagtcaaaacaaaaggagattttgtttgactttttacGTGAGCTGGAttctaaaacacaacacagaagtGTGCAGACGAGACTCCAGAAAAATTCCTCAGACATCCTCTAGCTGTACTCATCAAGTAATTGAAGTTTATTCAAGTAAACTCAAGCCACATTTCAATTTTCACAGCATAACAATTTGATTTCTAAATAATAATCTCTACGTATTAGTCGTTGTTTTTAATACTTGACAGATTCACTGTCACTGTTATGGTTTATTTCTCAGTTAAGGAAATTGAGCCAAGTGGCAGACAAACAATTATCAGATTctctggatttttgttttcatacaaacaaataatgcaaaCTTGTAATCCCAGTGTTAACTCACTGACATACATTGTACAGAGACCACAACAAAAACTACTTTTGAACATGCTatacacattcaaaattaaaagacATAAAGGTGTTTAATAAGTAATGTCATATTTTAACCCCTTCACTgtcaatatatacattgtttggATCCCTATATAAATTGGATATATACATTGGGAATGTATTTGGCAAATAGCtagatgtgttttgtgtatgtggGTGCAGCATATTTGGCAAGCTTTAACATGATCAGAAATATGTGAGAACTTGTAAAGCACATTCATTTAATCTGATCTTTAGCATTTACTACCCAACAATATAATCAGTTTTAAACTCCATGTATCTGTTTCCTTGGTTTCTATTGGTAATGCAAACTCATCTTGATTGAAGATGTTCCCTCTTTTAAATTATAGCAATTATGTatcaatgaatatatatatatatatattcagcaaTGTCTCTCTAAAAACAGGTTTaatttgtatctattttattcaaaactacCCTTTTGCCCCCACCTTTTTATATAGGAATTTGAACGTACCAAAAGTTAAATTAGTCTGTATATAATGAATGGAAGCCCATAAAATACTGTCCTCTGAGATCTACTGTATGTGCTCTCCATCCATTTCACACTGAAAATCCAGATCTGGAACAGCGGAGTTCAAGTATCAGTATGAGAGCAGACAGTACCGTCCCCTTTCAAATTCTAGCCATGTCCAGGACACaacaggagctgctgcaggatggggacccacacacacttttcagCCCTGCCCAATCCCACCCTAATACGTGTCGTGTGATGGATTTTACACTTCTGTATTTTCcagcagaaaaaatatagtTATAGTTGTTGTTCTTAGAAAAATCGCTAACATCAACTATcccttgtttttattgatgcaaTACAGCTattgattttcagaaaatattttatttgctcacttataaaatattaaactgatgAGATTCTATGCgagacaaaatgtttttgtcaatTAAGTTTGCATTGTTTGTGGAATGCCCTTCACATTGTaggatttgtaaaatatataaataaatcaataatcaaaCAGGAAATTGCTCTAAGGTATATCTGAGGACAGTACACTGATGCAATGCTAGGAAAGTACATGACaggacatttaaacaaacaaaaaaaataaaaacttcattGCCACTGGCATGGTGCCATTATAGCAGCAGTCTGCTTTCATGTCAGAGAAATGGGAAGAATATTAACTAATAGATCAAAggcctgtttgtgttttggtgcTCAAACTGTCAAGCAAGCTACACACGTTTGTATATCTTAAAAGGTTTCCTTAATGcacatgtaaaaaaaacaaaaactgaacaataaCATTCTAGActgataattaataataatattcataaagcAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197041 True 2205 lncRNA 0.36 2 17332536 17342156

Neighbor

gene id symbol gene type direction distance location
AMCG00006150 NA coding upstream 211031 17104337 ~ 17121505 (+)
AMCG00006151 NA coding upstream 230675 17095682 ~ 17101861 (+)
AMCG00006130 NA coding upstream 256272 17070040 ~ 17076264 (+)
AMCG00006125 dapk3 coding upstream 414556 16908516 ~ 16917980 (+)
AMCG00006143 NA coding upstream 601305 16723292 ~ 16731231 (+)
AMCG00006136 NA coding downstream 169746 17511902 ~ 17518833 (+)
AMCG00006191 NA coding downstream 446827 17788983 ~ 17811459 (+)
AMCG00006189 thop1,mepd coding downstream 509883 17852039 ~ 17877059 (+)
AMCG00006187 NA coding downstream 537827 17879983 ~ 17905624 (+)
AMCG00006162 LOC106613602 coding downstream 606367 17948523 ~ 17960210 (+)
G156430 NA non-coding upstream 160756 17159577 ~ 17171780 (+)
G156329 NA non-coding upstream 687687 16644447 ~ 16644849 (+)
G156326 NA non-coding upstream 704823 16625558 ~ 16627713 (+)
G156321 NA non-coding upstream 732678 16599532 ~ 16599858 (+)
G156302 NA non-coding upstream 827330 16504770 ~ 16505206 (+)
G156506 NA non-coding downstream 181078 17523234 ~ 17524750 (+)
G156509 NA non-coding downstream 193475 17535631 ~ 17547361 (+)
G156521 NA non-coding downstream 225403 17567559 ~ 17571532 (+)
G156564 LOC100846954,LOC107575789 non-coding downstream 365514 17707670 ~ 17708721 (+)
G156567 NA non-coding downstream 432509 17774665 ~ 17777870 (+)
AMCG00006149 NA other upstream 204903 17123205 ~ 17127633 (+)
G156327 NA other upstream 703354 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 1187298 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 1265638 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 1296567 16032892 ~ 16035969 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 320034 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 403977 17746133 ~ 17764228 (+)
G156640 NA other downstream 631585 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 848068 18190224 ~ 18356589 (+)
AMCG00006174 NA other downstream 1135972 18478128 ~ 18480087 (+)

Expression


Co-expression Network