XLOC_036383 (si:ch211-133l5.7)


Basic Information

Item Value
gene id XLOC_036383
gene name si:ch211-133l5.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 20832584 ~ 20838342 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071106
ACATATTTACAGACGACAGAGGAAGACGGCAGTGTGACTGCACTGTAAATTCACCATGTTTCATCTAAAGAATATCGCTGCCTTCATAATACTCTCTGCCTGCATTTATCAAGCTCAAGCTGGTGGCCAACGGGCGACATCAGACACAGGAAAAGTCACATTACAGCCATGGCTGGTGGGACTGGCAGCCGTTGTTGGATTTCTCTTTATCGTCTTCGTTGCCCTCATCATCCAAAGACTTTTTTTCAAGAAAGACAAAAGTGCAGAAAAAGCAGAAAAGCATGGATTTTATGAAAACATAGCAGCTGATCTGGAGGCAAGTGAGGAGACCAAGCAGACCAATTTCTAATGAGAAGAAAAGACGATAACGTCCTTGCAAGCCCGTCTTGCTCTCTATGGAAATCATGCTACAACTTTATGCAATGGCGCAGCCTTCACCCATTCACAGTGCTATTTAAACACCTTTTTTTGGCACATTCTCTATGCAAGTTTTACTACTTTGGTGTAGATGTAACTCAAATCCCTAAATATGAAACATTCATTATAGCACCGAGACCACTGGAACAGAAAAGCACATACTAAATGATTCACTTTGTGCACATAATGCTCTGATAAACTGGCTTTTGACTCGTATGACATGTCTCTGGGTTCGGCATGTATGTATGCTAAATAGACAAGGCTATGAGATCCATTACTCATTTTGAGTGACAGTTTGGACGTGTTAAATGCTTCCAGTCAAATGATGTAACCCAGTTTTGCTTTTGGAACCATTTGCTTGGCCTGGGGGGATTATGTGATGAAAATTTCATTTGCAGAAACAAAAAATGGCCAGGTGTTTAATTGTGTTAATAGGGAGTACAATTATTCCTCTGCTAAAAGGtgtaatttaaagtaaacagTGTTTAGAGCAAGACATTGCAAGCAAAAACATCTGTccatttgcagatatttaaactTTTGGGTTTTTCTTAAatcgtttttttttctcagtaagtttgtaaagaaaacatccaaagcACTCTCTTAAGTGtttcttttgtaaaataaacaaactaaaataaacaaaataatcaaaataaaataaacaaaaaattcaatatccaatattcagatttttgtgctagaaatgtatgcaaatgaatGCATGTTCAATTGTACACTGCATCATTTGCATAACAGTTTGCAATTCTTACAGTAATTAATCAACTGGTTAAATATGGCGATAACTACCCAGCTGATAGGGAATGTTTTCAGAACATTATATAATGATCACTAAAAGTTGTGAAATGGTAGCAtgtaacattaataaaatgaatgtttttggagg
>TCONS_00071107
GATATTTTTGCTCTGTTTTCACCAGAAAAGAACGACTGTCATTTTTGTAAACCTTTAAGTAAGCACtttgaaacaaacacacagactaaAAGTAACTATTATTTCATTTAAGAGTAAATAAAGTTTTTCTCtaatatattttttcagcacTTTAGACTGGCATGCCCTTCTGTTCTGCTGAAGAGTCCATTTGTCTTTACAGCATTACAGCACATAACATCATTATCTAAGTATAATCATGCACAATTACTCTGGGAGTTACATGCTGCGGTCTCTGCTCTCTTTATTGGATTTTGTACTTTGGACACAATAAAACCTTCACATATTTACAGACGACAGAGGAAGACGGCAGTGTGACTGCACTGTAAATTCACCATGTTTCATCTAAAGAATATCGCTGCCTTCATAATACTCTCTGCCTGCATTTATCAAGCTCAAGCTGGTGGCCAACGGGCGACATCAGACACAGGAAAAGTCACATTACAGCCATGGCTGGTGGGACTGGCAGCCGTTGTTGGATTTCTCTTTATCGTCTTCGTTGCCCTCATCATCCAAAGACTTTTTTTCAAGAAAGACAAAAGTGCAGAAAAAGCAGAAAAGCATGGATTTTATGAAAACATAGCAGCTGATCTGGAGGCAAGTGAGGAGACCAAGCAGACCAATTTCTAATGAGAAGAAAAGACGATAACGTCCTTGCAAGCCCGTCTTGCTCTCTATGGAAATCATGCTACAACTTTATGCAgtaattgttatttaattatattctaTCTTGTGTAACATgtcaatatatcattttaagttATACTTTTTGGCCTGCGgttttttaaagttgtttcttATATCCTCCACCAGATGGCGCAGCCTTCACCCATTCACAGTGCTATTTAAACACCTTTTTTTGGCACATTCTCTATGCAAGTTTTACTACTTTGGTGTAGATGTAACTCAAATCCCTAAATATGAAACATTCATTATAGCACCGAGACCACTGGAACAGAAAAGCACATACTAAATGATTCACTTTGTGCACATAATGCTCTGATAAACTGGCTTTTGACTCGTATGACATGTCTCTGGGTTCGGCATGTATGTATGCTAAATAGACAAGGCTATGAGATCCATTACTCATTTTGAGTGACAGTTTGGACGTGTTAAATGCTTCCAGTCAAATGATGTAACCCAGTTTTGCTTTTGGAACCATTTGCTTGGCCTGGGGGGATTATGTGATGAAAATTTCATTTGCAGAAACAAAAAATGGCCAGGTGTTTAATTGTGTTAATAGGGAGTACAATTATTCCTCTGCTAAAAGGtgtaatttaaagtaaacagTGTTTAGAGCAAGACATTGCAAGCAAAAACATCT

Function

symbol description
si:ch211-133l5.7 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM24 (small integral membrane protein 24).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-117 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM24 (small integral membrane protein 24).

Ensembl:

ensembl_id ENSDARG00000095633

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071106 False 1327 processed_transcript 0.36 4 20832584 20838022
TCONS_00071107 True 1363 mRNA 0.38 3 20832978 20838342

Neighbor

gene id symbol gene type direction distance location
XLOC_036382 BX511253.1 coding downstream 377382 20448121 ~ 20455202 (-)
XLOC_036381 BX511253.2 coding downstream 417623 20414846 ~ 20414961 (-)
XLOC_036380 NA coding downstream 418735 20407653 ~ 20413849 (-)
XLOC_036379 adamts10 coding downstream 451834 20298369 ~ 20380750 (-)
XLOC_036378 myo1f coding downstream 540662 20250484 ~ 20291922 (-)
XLOC_036384 BX004774.1 coding upstream 3792 20842134 ~ 20844502 (-)
XLOC_036385 NA coding upstream 7388 20845730 ~ 20850489 (-)
XLOC_036386 dohh coding upstream 14653 20852995 ~ 20858676 (-)
XLOC_036387 si:ch211-133l5.8 coding upstream 23016 20861358 ~ 20862443 (-)
XLOC_036388 haus5 coding upstream 59507 20897849 ~ 20914829 (-)
XLOC_036374 NA non-coding downstream 843351 19985842 ~ 19989233 (-)
XLOC_036359 NA non-coding downstream 2059575 18771607 ~ 18773009 (-)
XLOC_036389 CU861651.2 non-coding upstream 102117 20940459 ~ 20943772 (-)
XLOC_036390 NA non-coding upstream 140249 20978591 ~ 21045046 (-)
XLOC_036391 NA non-coding upstream 156603 20994945 ~ 21034346 (-)

Expression


Co-expression Network