RNA id: TCONS_00072028


Basic Information

Item Value
RNA id TCONS_00072028
length 677
lncRNA type intronic
GC content 0.38
exon number 4
gene id XLOC_036374
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19985842 ~ 19989233 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtacaagactgaagtaaaggtgaaatgactgtgacgttaaggtgtacctgataatagctgaagtgtgagccacagccactgatgttgaaacactgatgccaATCACCCCTctcttgattattaaaggtaatgttgaacCTTCCtcgtttttattagatttttaaatgtcaggtttttcacaaatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtactTCCAGtcgtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtctgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaacaaatgtaattattcACAAACATCTCTAATTTAGTCTTTCTTTCCCCAGCAGTGCAACATCAAACAAAcagtcttattccttggagggtcgagtggtcattGGACCTCACCTGGATCTAACGactgactttggatctggtctgaaactgaagtatgctgaagatgtcttttgcactctggaatttaagGGGTGTGTTGCAGACtcaatttgtttgtctgtgctggagaccagagggaaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072024 lncRNA downstream 508756 19473832 ~ 19477990 (-) True XLOC_036370
TCONS_00071073 lncRNA downstream 770108 19214207 ~ 19216638 (-) False XLOC_036363
TCONS_00072023 lncRNA downstream 1213737 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA downstream 1213737 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00072437 lncRNA downstream 1387390 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00072438 lncRNA upstream 418987 20407653 ~ 20413849 (-) True XLOC_036380
TCONS_00071105 lncRNA upstream 459455 20448121 ~ 20455202 (-) True XLOC_036382
TCONS_00071110 lncRNA upstream 857064 20845730 ~ 20848816 (-) False XLOC_036385
TCONS_00071109 lncRNA upstream 857064 20845730 ~ 20848888 (-) False XLOC_036385
TCONS_00072439 lncRNA upstream 857064 20845730 ~ 20849239 (-) False XLOC_036385
TCONS_00071093 mRNA downstream 9658 19948606 ~ 19977088 (-) True XLOC_036373
TCONS_00071092 mRNA downstream 11659 19948606 ~ 19975087 (-) False XLOC_036373
TCONS_00071091 mRNA downstream 82622 19801865 ~ 19904124 (-) True XLOC_036372
TCONS_00071090 mRNA downstream 337129 19642199 ~ 19649617 (-) True XLOC_036371
TCONS_00071089 mRNA downstream 499419 19469678 ~ 19487327 (-) False XLOC_036370
TCONS_00071094 mRNA upstream 84321 20072987 ~ 20138251 (-) False XLOC_036375
TCONS_00071095 mRNA upstream 107619 20096285 ~ 20138054 (-) False XLOC_036375
TCONS_00071096 mRNA upstream 107754 20096420 ~ 20118549 (-) False XLOC_036375
TCONS_00071097 mRNA upstream 109212 20097878 ~ 20138122 (-) True XLOC_036375
TCONS_00071098 mRNA upstream 205489 20194155 ~ 20230802 (-) False XLOC_036376
TCONS_00071084 other downstream 673331 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071076 other downstream 770089 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 771062 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 1401939 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 1448880 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071104 other upstream 426180 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 843918 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 853468 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 951793 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071158 other upstream 2295628 22284294 ~ 22287211 (-) False XLOC_036407

Expression Profile

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