RNA id: TCONS_00071105


Basic Information

Item Value
RNA id TCONS_00071105
length 496
lncRNA type antisense
GC content 0.48
exon number 2
gene id XLOC_036382
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 20448121 ~ 20455202 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCCACTTTCTTTCGGACAACAACAGACTTCCTACGACGCCATATTTTATGAGCGACAGACGAACGCGAGGCCCCTGGTGCGCGTCGCGTTCGTTACGTAACATAGTCGTTCAATCAGTTGCCTGTGGGAATGAGCGTCGCGCTTCTGTTTGAGGACCAGCtgtttagtttttaattagtttaacgtACACCACATTGAAGTAGTTCCTGAGGCTTTATTATTAAGCCATTGTGGGTTTATCTTATGATTATGTGAGCAACGCCCCTCCAGTGGCACGTTTGATTGTGACATTTTATAAGTTTGACAGAATATCAGTGCGACTTTGTGTGTCAGTCACTTCCACAGCGACCCACAAAAGGAGGGTAACCGCTTAGCATGATGTAGAGGATGACGCCCAGGCTCCACAGGTCACAGCGCTTATCGTAAATGGTGGCCTCCTCGTTGAAGGCTTCCACAACTTCCGGCGCCATGTATTCAGCAGATCCACACTAAGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154278

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072438 lncRNA downstream 34272 20407653 ~ 20413849 (-) True XLOC_036380
TCONS_00072029 lncRNA downstream 458888 19986746 ~ 19989233 (-) False XLOC_036374
TCONS_00072025 lncRNA downstream 459112 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00071110 lncRNA upstream 390528 20845730 ~ 20848816 (-) False XLOC_036385
TCONS_00071109 lncRNA upstream 390528 20845730 ~ 20848888 (-) False XLOC_036385
TCONS_00072439 lncRNA upstream 390528 20845730 ~ 20849239 (-) False XLOC_036385
TCONS_00072440 lncRNA upstream 390528 20845730 ~ 20850442 (-) False XLOC_036385
TCONS_00071111 lncRNA upstream 390528 20845730 ~ 20850489 (-) True XLOC_036385
TCONS_00071103 mRNA downstream 67371 20298369 ~ 20380750 (-) True XLOC_036379
TCONS_00071102 mRNA downstream 156199 20250484 ~ 20291922 (-) True XLOC_036378
TCONS_00071100 mRNA downstream 202229 20232421 ~ 20245892 (-) False XLOC_036377
TCONS_00071101 mRNA downstream 204732 20233013 ~ 20243389 (-) True XLOC_036377
TCONS_00071099 mRNA downstream 217562 20197269 ~ 20230559 (-) True XLOC_036376
TCONS_00071107 mRNA upstream 377776 20832978 ~ 20838342 (-) True XLOC_036383
TCONS_00071112 mRNA upstream 397793 20852995 ~ 20858676 (-) True XLOC_036386
TCONS_00071113 mRNA upstream 406156 20861358 ~ 20862443 (-) True XLOC_036387
TCONS_00071114 mRNA upstream 442647 20897849 ~ 20914829 (-) True XLOC_036388
TCONS_00071116 mRNA upstream 592119 21047321 ~ 21052371 (-) True XLOC_036392
TCONS_00071104 other downstream 33160 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071084 other downstream 1134706 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071076 other downstream 1231464 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 1232437 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 1863314 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071106 other upstream 377382 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 386932 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 485257 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071158 other upstream 1829092 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071164 other upstream 1865645 22320847 ~ 22326703 (-) False XLOC_036408

Expression Profile

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