RNA id: TCONS_00071099


Basic Information

Item Value
RNA id TCONS_00071099
length 1752
RNA type mRNA
GC content 0.54
exon number 12
gene id XLOC_036376
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 20194155 ~ 20230802 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGAATCAGTGCACGGTTCAGGTCAAGCTTGAGCTGGGACACAGAGCTCAGCTGAGGAAGAAAGTGACGTCTGAGGGCTTCACCCACGACTGGATGGTGTTTGTGCGAGGCCCCGAAGGCAGCGACATTCAGCACTTTGTGGATAAAGTGGTCTTCCGGCTGCACGAGAGCTTTCCAAAACCCAAGAGAGTGTGTAAGGAGCCCCAATACAAGGTTGAGGAGTCAGGTTATGCTGGCTTTCTGATGCCCATAGAGGTCTACTTCAAAAACAAGGAGGAACCAAAGAAGGTGTGCTTCAATTACGACCTGTTCCTCAACCTGGAGGGGAACCCGCCGGTCAATCACCTGCGTTGTGAGAAACTCACCTTCAATAATCCCACGCGGGACTTCCGTCGAAAGCTTGTCAAAGCGGGAGGGCTCATCGTGGTCCCAGAGGGGGCAGAGGTGGTCCCAAGACCCAGCCCAGATTACCCTATGCTTCCAACCATTCCACTCTCTGCCTTTTCAGACCCCAAGAAGAGCAAGACCTCACAAGGATCAAAGGAGCCGAGTAAAGAAGGCAGCAAAGTGTCCAAATCCCACAAAATGGCCAAGGAGCATCGAGAGCGGCCGCGAAAAGACTCTGAGAGCAAAGCTACATCTAAAGGAGACTCTGAGCGGGATGGCACCAGCAAAAGCAGCCGCGACCCTTCGTCATCTTCATCCTCGTCATCCAAGAAAACAGAAATTAAAGTGAAAGATGACAACAAAGTCCTGCCCAAAGCTGCTTTTAAGGAGCCCAAACTGACATTGAAGGAGTCCAAAATGGAAAGCATGTCTCCTAAAGGAGGAGGTGCAGGAGcggcgggtggaggaggaggagcagccGATGGAAAAGCACCCAGCAAACGACCCTCTAATGCAGAGTCTCCCAAACCGAGTGTGAAGAAGCCAAAGAAGGGGAGTTCAGAGGGGTCGAAGTGCTCCGGCAGTGGGGGGTTCACTGGGACCTCCCCCCGCACCACGTCTTCCTCCAACACCTCCTCAGGATATGCCGAAAAGAAGACCTCGAAGGAGAAGGGTCGCTGGGCCAAGGGAAAGTCAGAGGCACAGGGGGTCAAGGAGACCAAGAAGCCTCCGGAATCAGACGACTCCAACTCTGATGATGAGGCCTCGTCCAAATCTGAGCAGTCGGCACCTTCCAGCCCGTCTAACTCCAGCTCCAGCTCAGAGTCCAGCTCCGATTCAGACTTTGAACCCGAGCAGAAACAAGGCCAAGggCCCCTGCGTTCGATGGTGGAGGACCTGCAGTCGGAGGAGTCTGACGATGACGACAGCAGCTCAGACGAAGAGACGCCAGTCAAGAACAACCTGCCCAGTCGAGACTCCAGGCTGAGTTTGGACAGTGAGAGCGACTGCAGTGACGGGCCACAGCGCCCCAGTCGAGACGCTCCACCTCAGCCacccaaacacagctccaacaaCAAGCAGGTGTCGGGCAGAAAGAGTCCAGATCCTTGTTTACGTCAAGAGAAGGTGCTGAAGAAGGGATACGACAAGGTAGGAAGGGCGTACACAGACGAGCTTGTAGACCTTCATCGCAGGCTAATGGCTTTACGAGAGCGTAACGTTCTTCAGCAGATCGTCAACCTCATCGAGGAGACCGGCCACTTCAACGTCACCAACACAACTTTTGACTTTGATCTTTTCTCACTGGACGAGTCGACCGTCCGAAAACTACAGAGCTACCTGGAGGCCACCACCACATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-45 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human MLLT1 (MLLT1 super elongation complex subunit).

Ensembl:

ensembl_id ENSDART00000193677

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072029 lncRNA downstream 208036 19986746 ~ 19989233 (-) False XLOC_036374
TCONS_00072025 lncRNA downstream 208260 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00072438 lncRNA upstream 177094 20407653 ~ 20413849 (-) True XLOC_036380
TCONS_00071105 lncRNA upstream 217562 20448121 ~ 20455202 (-) True XLOC_036382
TCONS_00071110 lncRNA upstream 615171 20845730 ~ 20848816 (-) False XLOC_036385
TCONS_00071109 lncRNA upstream 615171 20845730 ~ 20848888 (-) False XLOC_036385
TCONS_00072439 lncRNA upstream 615171 20845730 ~ 20849239 (-) False XLOC_036385
TCONS_00071094 mRNA downstream 59018 20072987 ~ 20138251 (-) False XLOC_036375
TCONS_00071097 mRNA downstream 59147 20097878 ~ 20138122 (-) True XLOC_036375
TCONS_00071095 mRNA downstream 59215 20096285 ~ 20138054 (-) False XLOC_036375
TCONS_00071096 mRNA downstream 78720 20096420 ~ 20118549 (-) False XLOC_036375
TCONS_00071093 mRNA downstream 220181 19948606 ~ 19977088 (-) True XLOC_036373
TCONS_00071100 mRNA upstream 1862 20232421 ~ 20245892 (-) False XLOC_036377
TCONS_00071101 mRNA upstream 2454 20233013 ~ 20243389 (-) True XLOC_036377
TCONS_00071102 mRNA upstream 19925 20250484 ~ 20291922 (-) True XLOC_036378
TCONS_00071103 mRNA upstream 67810 20298369 ~ 20380750 (-) True XLOC_036379
TCONS_00071107 mRNA upstream 602419 20832978 ~ 20838342 (-) True XLOC_036383
TCONS_00071084 other downstream 883854 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071076 other downstream 980612 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 981585 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 1612462 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 1659403 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071104 other upstream 184287 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 602025 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 611575 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 709900 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071158 other upstream 2053735 22284294 ~ 22287211 (-) False XLOC_036407

Expression Profile

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