RNA id: TCONS_00072438


Basic Information

Item Value
RNA id TCONS_00072438
length 790
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_036380
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 20407653 ~ 20413849 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAATGTTTCCATTTGGCCCTCATATCACTTTGGAGGAGTTCCATTCTCTGTTTTCAGAGAGGAACTTGTTGAGCGGGCCGGCAGGGGCCATTTCCATCACCAGCATGAGCGCTTCGGCCTCACAGAGTCCAATCATGCGCACAATGAAGGGATCACTCAGCTGATGCATAATCTCAGCCTCTCGCATCATTTCATCCCTCACCGATTTCTCGTTCTCATTCTTCAGCACTTTAATTGCCACATCGATCTGTTTGCTACTCAAGACAAAAAATCATGTGCTCACCCAGTGCACTCATGTCATGTTGTATAACGTTATAAAGCTTTTCTACTCACCTTTCCATTTTGAAAACACCTTTCTTGACGCAGCCGAAGTTTCCAGACCCAAGCTCCACCTCGTCGATCATCAATTTGTCTCTTTTGATGAACAGGGTCTTTTTCTTCAGTTCGTTTGGATCGTCATAAGGACTAGTGAATCCGTCGTGGTCCATTGGTAGAGATGGGCGTGAACCCTCAGCTCCCATTGGCTTAGGCACTGAGGAACATTAGTCAATTAGTGGgctaataaacaatttaaatgaagAATGTTTCAAACTACTTTACAACGGTTCATCTGGAGTATGAGTGTCTATGAGAATCTGGATGTTTAGAAGGGATTTttattgatgttgttgctgttcTTGTTAGATTATCGGCCAACTCCAACACCAGTATTTGTTACTTGCTCACTGATTTGAACTTTTgtcattaaattaaatgtttttaatgattGAACAGATGCATTATAGctt

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0008033 tRNA processing biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072029 lncRNA downstream 418420 19986746 ~ 19989233 (-) False XLOC_036374
TCONS_00072025 lncRNA downstream 418644 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00072030 lncRNA downstream 418657 19987351 ~ 19988996 (-) True XLOC_036374
TCONS_00072026 lncRNA downstream 418684 19985843 ~ 19988969 (-) False XLOC_036374
TCONS_00072028 lncRNA downstream 418987 19986746 ~ 19988666 (-) False XLOC_036374
TCONS_00071105 lncRNA upstream 34272 20448121 ~ 20455202 (-) True XLOC_036382
TCONS_00071110 lncRNA upstream 431881 20845730 ~ 20848816 (-) False XLOC_036385
TCONS_00071109 lncRNA upstream 431881 20845730 ~ 20848888 (-) False XLOC_036385
TCONS_00072439 lncRNA upstream 431881 20845730 ~ 20849239 (-) False XLOC_036385
TCONS_00072440 lncRNA upstream 431881 20845730 ~ 20850442 (-) False XLOC_036385
TCONS_00071103 mRNA downstream 26903 20298369 ~ 20380750 (-) True XLOC_036379
TCONS_00071102 mRNA downstream 115731 20250484 ~ 20291922 (-) True XLOC_036378
TCONS_00071100 mRNA downstream 161761 20232421 ~ 20245892 (-) False XLOC_036377
TCONS_00071101 mRNA downstream 164264 20233013 ~ 20243389 (-) True XLOC_036377
TCONS_00071098 mRNA downstream 176851 20194155 ~ 20230802 (-) False XLOC_036376
TCONS_00071107 mRNA upstream 419129 20832978 ~ 20838342 (-) True XLOC_036383
TCONS_00071112 mRNA upstream 439146 20852995 ~ 20858676 (-) True XLOC_036386
TCONS_00071113 mRNA upstream 447509 20861358 ~ 20862443 (-) True XLOC_036387
TCONS_00071114 mRNA upstream 484000 20897849 ~ 20914829 (-) True XLOC_036388
TCONS_00071116 mRNA upstream 633472 21047321 ~ 21052371 (-) True XLOC_036392
TCONS_00071084 other downstream 1094238 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071076 other downstream 1190996 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 1191969 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 1822846 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 1869787 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071104 other upstream 997 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 418735 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 428285 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 526610 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071158 other upstream 1870445 22284294 ~ 22287211 (-) False XLOC_036407

Expression Profile

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