XLOC_036405 (BX323830.1)


Basic Information

Item Value
gene id XLOC_036405
gene name BX323830.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 21723326 ~ 21913297 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071147
CGAGTCTTTAAAAGATCCGGTTCAAACGTTAGTGTCACTTGATCTGCGCCATTTGCGGGTAGCCTATTTATTGATTCACTGACAAGATCCGACTCGATCCGAATCGGTTATGCAAAATGTTTGATTCGCTCAAAAGATTCAGTGCAAAGGATTAATTTGTGGCGGACTTAGACAATTCAAAAATACGTTTTATTGGTGTTGTTTTACAGCACACGATCTCAAATTCAATGTATACGGTAACATTACGTCAGGTCTTTCTTTTTATATAACGTTAGCTTGATGGACGCATCGCGTGAGCAAATCCGCACGCGCGAGAAATAGGTTACCAAGACACAAACCTAATTGCCTGGAAATCTTTTCCTTCACATCAAACTTACTTTGGGCTTTTAGTCATTAGTGCCAGTGCTCGaagattcaacacatttctttccCTTCTGGATATGTCCCTCCAGGATTGCAAAAAACTGCAGTGCACCGAGGCCCAACACAGCCATGGAAACACTTCACAAAACACCTGTCAGACCTGATCCTGTTCAAACACCTGCTTCAGGAATCACAGCCTACCATCAGCGAGATTAAAGACGAGCTGAGAGAGTTGCCAGTCTTCACACACAGAGAGACCTGCAGCTGGACACTTCTTGTGCTCTGATATGAGGACTCATGAGTGATGGCTGTGTGTGTTTCCTACTACCCTGACTGAAAGCCGTTAT
>TCONS_00072031
ATTGCCTGGAAATCTTTTCCTTCACATCAAACTTACTTTGGGCTTTTAGTCATTAGTGCCAGTGCTCGaagattcaacacatttctttccCTTCTGGATATGTCCCTCCAGGATTGCAAAAAACTGCAGTGCACCGAGGCCCAACACAGCCATGGAAACACTTCACAAAACACCTGTCAGACCTGATCCTGTTCAAACACCTGCTTCAGGAATCACAGCCTACCATCAGCGattaaTCTCAAGCAATCACCTGTGCGCTATGTAGGTATTCGGCCTGATTCTAAAACAATATCCCACAGATCCATAAACGCAATTTCCTGGTGATGGAGCGATTTGAGGCATATGCACAAACCAGAGAACTTTGCTCCAGGCCAATTGAGCACGATGGAGGTGGGAGGCGAGTTTGGTATACATAAGTATTTGCTATTTCATTTTATGACTCCCAAAGGAGGGATATCAGAGAAAGGAGAAGAACAGAGGAAAGCAGGGCAAATAAAAGAAGGATGCAGAGATATTGTATTGACTCTGCTGGGGCACATTATGGAAATGAATCAACTTGATTCTTGTTATGAAAACAAAACCCTACTATAAAGAGACAGACGGATTGAAACAAAGGAAAGCTCTTGTAGGGGAGTAATGATATGAGGTGATGTAATAGGCATCCTTAAATCATTCTTCC
>TCONS_00071148
CGAGTCTTTAAAAGATCCGGTTCAAACGTTAGTGTCACTTGATCTGCGCCATTTGCGGGTAGCCTATTTATTGATTCACTGACAAGATCCGACTCGATCCGAATCGGTTATGCAAAATGTTTGATTCGCTCAAAAGATTCAGTGCAAAGGATTAATTTGTGGCGGACTTAGACAATTCAAAAATACGTTTTATTGGTGTTGTTTTACAGCACACGATCTCAAATTCAATGTATACGGTAACATTACGTCAGGTCTTTCTTTTTATATAACGTTAGCTTGATGGACGCATCGCGTGAGCAAATCCGCACGCGCGAGAAATAGGTTACCAAGACACAAACCTAATTGCCTGGAAATCTTTTCCTTCACATCAAACTTACTTTGGGCTTTTAGTCATTAGTGCCAGTGCTCGaagattcaacacatttctttccCTTCTGGATATGTCCCTCCAGGATTGCAAAAAACTGCAGTGCACCGAGGCCCAACACAGCCATGGAAACACTTCACAAAACACCTGTCAGACCTGATCCTGTTCAAACACCTGCTTCAGGAATCACAGCCTACCATCAGCGGCCAAGCCTGTTTCTCCTGGGCACAAACATTGAGCATATAATCTTTAAGCAGAGCGAACGAAAGCCGCCTTGCCTCCATCCGACCTGCTGAGTCTCCTGCAGGGG
>TCONS_00071149
CGAGTCTTTAAAAGATCCGGTTCAAACGTTAGTGTCACTTGATCTGCGCCATTTGCGGGTAGCCTATTTATTGATTCACTGACAAGATCCGACTCGATCCGAATCGGTTATGCAAAATGTTTGATTCGCTCAAAAGATTCAGTGCAAAGGATTAATTTGTGGCGGACTTAGACAATTCAAAAATACGTTTTATTGGTGTTGTTTTACAGCACACGATCTCAAATTCAATGTATACGGTAACATTACGTCAGGTCTTTCTTTTTATATAACGTTAGCTTGATGGACGCATCGCGTGAGCAAATCCGCACGCGCGAGAAATAGGTTACCAAGACACAAACCTAATTGCCTGGAAATCTTTTCCTTCACATCAAACTTACTTTGGGCTTTTAGTCATTAGTGCCAGTGCTCGaagattcaacacatttctttccCTTCTGGATATGTCCCTCCAGGATTGCAAAAAACTGCAGTGCACCGAGGCCCAACACAGCCATGGAAACACTTCACAAAACACCTGTCAGACCTGATCCTGTTCAAACACCTGCTTCAGGAATCACAGCCTACCATCAGCGGTAAGGCCTCTGACTTTATTCTTTATGACACTGCTTTATCATGTATGGAGAACGTTGCAATAAGAGTTGCAATCATAAAAAGAAGGTTGGATAATAGAGAAACACTGCTGCAGGAAACAAATAAGAGAAAACaatgtgtgtttatgcatgtatGAGCTGGAATACATTTCAAGCATAAACAATGGGAACATTGCTATCTCACTGTTCATGTGTGTCTAAACCTAAAATGAGAATATGGC

Function

GO:

id name namespace
GO:0070646 protein modification by small protein removal biological_process
GO:0000731 DNA synthesis involved in DNA repair biological_process
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117219

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071147 False 710 lncRNA 0.44 3 21723326 21913297
TCONS_00072031 False 679 lncRNA 0.42 3 21819292 21912956
TCONS_00071148 False 677 lncRNA 0.44 3 21852129 21913297
TCONS_00071149 True 811 lncRNA 0.41 2 21912380 21913297

Neighbor

gene id symbol gene type direction distance location
XLOC_036404 NA coding downstream 220670 21436215 ~ 21502656 (-)
XLOC_036403 NA coding downstream 334815 21385364 ~ 21388511 (-)
XLOC_036402 ela2l coding downstream 350841 21366771 ~ 21372485 (-)
XLOC_036401 gpr37l1b coding downstream 455023 21265263 ~ 21268303 (-)
XLOC_036399 NA coding downstream 467648 21245130 ~ 21255678 (-)
XLOC_036406 nphp4 coding upstream 64760 21978057 ~ 22274509 (-)
XLOC_036407 si:ch211-147a11.3 coding upstream 370267 22283564 ~ 22288261 (-)
XLOC_036408 cep104 coding upstream 384516 22297813 ~ 22326744 (-)
XLOC_036409 smim1 coding upstream 428309 22341606 ~ 22343222 (-)
XLOC_036410 NA coding upstream 469953 22383250 ~ 22428019 (-)
XLOC_036400 NA non-coding downstream 470484 21248844 ~ 21252842 (-)
XLOC_036390 NA non-coding downstream 678280 20978591 ~ 21045046 (-)
XLOC_036411 NA non-coding upstream 471445 22384742 ~ 22434110 (-)
XLOC_036413 NA non-coding upstream 492578 22405875 ~ 22474642 (-)
XLOC_036420 BX072561.2 non-coding upstream 931403 22844700 ~ 22845798 (-)

Expression


Co-expression Network