RNA id: TCONS_00071148


Basic Information

Item Value
RNA id TCONS_00071148
length 677
lncRNA type lincRNA
GC content 0.44
exon number 3
gene id XLOC_036405
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 21723326 ~ 21913297 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGTCTTTAAAAGATCCGGTTCAAACGTTAGTGTCACTTGATCTGCGCCATTTGCGGGTAGCCTATTTATTGATTCACTGACAAGATCCGACTCGATCCGAATCGGTTATGCAAAATGTTTGATTCGCTCAAAAGATTCAGTGCAAAGGATTAATTTGTGGCGGACTTAGACAATTCAAAAATACGTTTTATTGGTGTTGTTTTACAGCACACGATCTCAAATTCAATGTATACGGTAACATTACGTCAGGTCTTTCTTTTTATATAACGTTAGCTTGATGGACGCATCGCGTGAGCAAATCCGCACGCGCGAGAAATAGGTTACCAAGACACAAACCTAATTGCCTGGAAATCTTTTCCTTCACATCAAACTTACTTTGGGCTTTTAGTCATTAGTGCCAGTGCTCGaagattcaacacatttctttccCTTCTGGATATGTCCCTCCAGGATTGCAAAAAACTGCAGTGCACCGAGGCCCAACACAGCCATGGAAACACTTCACAAAACACCTGTCAGACCTGATCCTGTTCAAACACCTGCTTCAGGAATCACAGCCTACCATCAGCGGCCAAGCCTGTTTCTCCTGGGCACAAACATTGAGCATATAATCTTTAAGCAGAGCGAACGAAAGCCGCCTTGCCTCCATCCGACCTGCTGAGTCTCCTGCAGGGG

Function

GO:

id name namespace
GO:0070646 protein modification by small protein removal biological_process
GO:0000731 DNA synthesis involved in DNA repair biological_process
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194584

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072447 lncRNA downstream 349473 21436215 ~ 21502656 (-) True XLOC_036404
TCONS_00072446 lncRNA downstream 463618 21385364 ~ 21388511 (-) True XLOC_036403
TCONS_00071146 lncRNA downstream 479682 21370285 ~ 21372447 (-) True XLOC_036402
TCONS_00072444 lncRNA downstream 596451 21245130 ~ 21255678 (-) True XLOC_036399
TCONS_00071159 lncRNA upstream 370997 22284294 ~ 22287373 (-) False XLOC_036407
TCONS_00071161 lncRNA upstream 373237 22286534 ~ 22288026 (-) True XLOC_036407
TCONS_00071165 lncRNA upstream 412019 22325316 ~ 22326696 (-) True XLOC_036408
TCONS_00071167 lncRNA upstream 428309 22341606 ~ 22343203 (-) False XLOC_036409
TCONS_00071168 lncRNA upstream 428309 22341606 ~ 22343222 (-) True XLOC_036409
TCONS_00071145 mRNA downstream 479644 21369031 ~ 21372485 (-) False XLOC_036402
TCONS_00071144 mRNA downstream 479683 21366771 ~ 21372446 (-) False XLOC_036402
TCONS_00071143 mRNA downstream 583826 21265263 ~ 21268303 (-) True XLOC_036401
TCONS_00071142 mRNA downstream 667370 21166053 ~ 21184759 (-) True XLOC_036398
TCONS_00071140 mRNA downstream 709579 21140812 ~ 21142550 (-) False XLOC_036397
TCONS_00071151 mRNA upstream 64760 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071150 mRNA upstream 64760 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071152 mRNA upstream 65321 21978618 ~ 21988833 (-) False XLOC_036406
TCONS_00071153 mRNA upstream 65321 21978618 ~ 22274222 (-) False XLOC_036406
TCONS_00071154 mRNA upstream 238642 22151939 ~ 22157301 (-) False XLOC_036406
TCONS_00071115 other downstream 908357 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 1007627 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071106 other downstream 1014107 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071104 other downstream 1437168 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071084 other downstream 2538714 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071158 other upstream 370997 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071164 other upstream 407550 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071166 other upstream 428309 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071179 other upstream 620274 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071180 other upstream 622731 22536028 ~ 22538950 (-) True XLOC_036416

Expression Profile

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