RNA id: TCONS_00072446


Basic Information

Item Value
RNA id TCONS_00072446
length 1908
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_036403
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 21385364 ~ 21388511 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCCTTTGTCACTAGCAGCATACTGAGAGGAAAAGGAGAGGCAGAGAAGTCTGTGTGTGACATCTGGATCACCCTGCTTCTTCTGAGACAGCTGGCTCTTGAGAGCTGACACTTCCTCCTTCAGGGCCGCGATCGCATCATTCTTCCTCTGGGACTCATCGTCAAAGCACAGAGACACACGAATATGTCCCTCTCCAAGGCTATGCAAGCTCTCCTCCTGAGGAAGAACAGGGTATTATTTAGGCATATCAGTAGCATGGATGGTCAAGCAAAGGGTCAGTCCTTATTTTTAAACCGAAAAAAAGCTGGGGTTTTCTGCAGCTAAAAATGACTGGAAGGCAGTTGACACCAAAAAGcagaaattaaacattaaaatgaggTGTCTGCTTATGTGTACACagcaaggtgtttttttttaactggatgTTGATCACCTCGTCCATAGGAAGGCATTGGATGTTTTGAGAAATGTTAGGTTGAGTTATACTTCTGAGATTACATCCTCTGTTAGCACTCCAGCTTCCTgcaaaacatatacagttgaatagTAAACAAAGGAAAACATTGTCTAAAatattctgcactgtaaaaaaaatagccTGTAGCTTTGGATTTTTAGGTGTTTTcagtttatatttttaaactgtATCAAGGGAAGTCATGGCCCAGTAAAAGATTCTGACAGTACAATAAcgttggataaaaatatcagtttcacggtattgtgattactgctctaaaatatattctttttaaatgtctgggtaaaaaaacaaaaactttttttccaatttgaacacaaaacattttattttgagaaacatttcaaatattttggaacagtaaacatccCAGCAGCCACATAATGTAAACATAATGTCATATTCTAAAATcatccaaatatcaacatctaatgatgttacagcttgaaaaTGTGTTGATGTTAACcaactatgacgtctatcagatgttggattttggttgccatacctaatgaataaatgtcagtatttgacatcaatgtgacgttggtttaagatgttggctcaacattagattttggtcactttccaacacaacctaaaatcaacctaatattAAAATCATTTGACATCGTTTTTGAACGTCAAATTAactttgtccttagatgctggcaaaacattgaattttggtcaccaaaCATTACGACCTACATCTACCTAAAATTATTGTCTATGATGTTATGTGCCAGCTgggatgtcaggctaaataattcaaataaatcactaTATCAATCActctgctgtctttatttgtttcaaaaacaacagatttctgtacaatttaaaacagaatgtgttttgctggagatactgttgtcctaaaaaactaatttaaaaaaaaacgtaaataaaaaaatcacataacTAAGGAACGGTTaaacagaaaattttggcagttttaaaaccttgactttccaaACCGGGGTAtacttgaaaatggttatcgtcccatgtccAATCATGATCTCTGCTCTGACAGTTTTTGATGTAGACTCCAGGAGATATACGGACCCAGTGGGTGTGAATAATTTTGGACTTGACTGCATATACAAGGtcagaaatatttatataatataatacaattcacTAAAAAGACTATAAAAGTTTGTTGAAGTTTACATTTAGATACAAAACATGAAAAGTTGTTGAAGCAGAGGTTCCCATGAGGATCCATCCGTTTGGTGCcggtttgaatttttttattttatttttttatggaacTGTACTGCTTTAGGTTTTATACTGGACATATTTTGAATTAGATTTGAACGTAGTTTTTTTCATGTCAGGTTGATTTTTAATAATAGTATGCATTTTTAAGTATATCGTTTTTAAGTTTCAGTTTTAcctcaattacattttttt

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071146 lncRNA downstream 12917 21370285 ~ 21372447 (-) True XLOC_036402
TCONS_00072444 lncRNA downstream 129686 21245130 ~ 21255678 (-) True XLOC_036399
TCONS_00072445 lncRNA downstream 132522 21248844 ~ 21252842 (-) True XLOC_036400
TCONS_00071141 lncRNA downstream 243481 21141052 ~ 21141883 (-) True XLOC_036397
TCONS_00071137 lncRNA downstream 278341 21104997 ~ 21107023 (-) True XLOC_036396
TCONS_00072447 lncRNA upstream 47704 21436215 ~ 21502656 (-) True XLOC_036404
TCONS_00071147 lncRNA upstream 334815 21723326 ~ 21913297 (-) False XLOC_036405
TCONS_00072031 lncRNA upstream 430781 21819292 ~ 21912956 (-) False XLOC_036405
TCONS_00071148 lncRNA upstream 463618 21852129 ~ 21913297 (-) False XLOC_036405
TCONS_00071149 lncRNA upstream 523869 21912380 ~ 21913297 (-) True XLOC_036405
TCONS_00071145 mRNA downstream 12879 21369031 ~ 21372485 (-) False XLOC_036402
TCONS_00071144 mRNA downstream 12918 21366771 ~ 21372446 (-) False XLOC_036402
TCONS_00071143 mRNA downstream 117061 21265263 ~ 21268303 (-) True XLOC_036401
TCONS_00071142 mRNA downstream 200605 21166053 ~ 21184759 (-) True XLOC_036398
TCONS_00071138 mRNA downstream 242762 21137446 ~ 21142602 (-) False XLOC_036397
TCONS_00071151 mRNA upstream 589546 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071150 mRNA upstream 589546 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071152 mRNA upstream 590107 21978618 ~ 21988833 (-) False XLOC_036406
TCONS_00071153 mRNA upstream 590107 21978618 ~ 22274222 (-) False XLOC_036406
TCONS_00071154 mRNA upstream 763428 22151939 ~ 22157301 (-) False XLOC_036406
TCONS_00071115 other downstream 441592 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 540862 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071106 other downstream 547342 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071104 other downstream 970403 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071084 other downstream 2071949 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071158 other upstream 895783 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071164 other upstream 932336 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071166 other upstream 953095 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071179 other upstream 1145060 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071180 other upstream 1147517 22536028 ~ 22538950 (-) True XLOC_036416

Expression Profile

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