RNA id: TCONS_00071138


Basic Information

Item Value
RNA id TCONS_00071138
length 2608
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_036397
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 21137446 ~ 21142602 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCTCATTTCATTTAAGatagaacttttattttgaaaaaagggTCACGTTTGTGATGCGGAAATACTGCAGCAAGTATTAAAttcctatttttttttgttgcggCTTTTGTCTGCTTGTTGAGCTGTTcttgtgtttttaatgtatttttcttttctaaataaaaaagGAATAGTACTCAATCCATACGTCATTATATCCCAGCTGCATGATGGCAGGTTTGCTTTCTACGCAATGCAACTCAACGCTGAGTAAATTAAAACACTTGAGCAATAACCCTGCCCTGTCAGTTTTAACGAGCACTCATCGTAAATACAGCAGTAAGGATGGAGCAGGATCTGAGTATTTGCACAAGAGTATCGTCCCGAGCATGCACTACCAGAAGAGTTTACCCAGATTACCAGTTCCAAAATTGGAGGATACAATACGGAGGTATTTGGCAGCTCAAAGACCCCTGCTGAATGATGAGCAGTACAGTAACACAGAAAAATTAGCACAAGAGTTTCAGAGTGGTGCTGGCAAGCAGTTACATGAAGAACTTGTAGCCTTGgacaagaaaaacaaacacaccagCTACATATCAGCTCCATGGTTTGACATGTACTTGTCTGCTCGGGAGTCTATAGTGCTTAACTTTAACCCCTTCATGTCCTTTAACCCTGACCCCAAACCCGAATACAATGACCAGCTTGTTCGGGCCACCAACATGGTGTGCTCAGCAGTCCGCTTCATGAAGACGCTTCGTGCCGGTTTACTGGAGCCAGAGGTGTTTCACCTTAACCCTGCCAAAAGTGACACAGATAGTTTCAAGAAGCTGATTCGATGGGTGCCGCCCTCCATATCGTGGTTTGGAGCCTACATGGTGAACGCCTATCCTCTGGATATGTCCCAATACTTTCGCCTCTTCAACTCAACACGTATACCAAAATACAAGAGGGATGAGCTCCTCACAGATGACAGGGGCAGGCACCTGCTCGTAATGAAGCGAGGAAACCTGTATGTGTTTGATGCTCTTGATCGAGACGGCAACCTGATCAAGCCTGCTGAGGTTCAAGCTCACCTTAAATACATACTAGAAGATCCAACACAAGCTTCTGCGTTCCCCTTAGGTGTCCTAACTAGTGAGAATAGAGACACCTGGACAGGGTTGAGACAAAAACTACTTGATGCTGGAAATGGTGAAGCTCTGCAGTTAGTGGACACTGCTTTGTTTTGCCTGTGCTTGGATGAGGAGGTGCTGAGAGACCACATCCACATCTCCCACAACATGCTGCATGGTGACGGCTGCAACCGCTGGTACGACAAGTCCTTCAGTGTCATCTTGGCTAAGGATGGACAGGCAGCTATAAACTTCGAGCACTCTTGGGGTGATGGTGTGGCTGTCTTGCGTTTCCAGAATGAGGTCTTCAAGGACACCACGGAGAAGCCTCTGGTTGGGCCTGGTTCTCAGCCTGCGTCCGTAGACTCGTCTTCAGCGGTGCGCCGTTTAGAGTTCAAGCTTAATGACGAGTTAAAAGCTGGAATCACAAAAGCCAAAGAAAATTTCCAGGCTGCCGTATCAAAGCTCACCATCGATGCCATGGAGTTCAAGAAAGGTGGAAAGGAGCAGCTTAAGAAGAAGAAGCTCAGCCCCGATGCCATCGCACAGCTTGCTTTCCAGATGGGCTTCCTGAGGCAATACGGCCAGACGGTCGCCACTTATGAGTCCTGCAGCACTGCAGCCTTTAAACACGGCCGCACTGAAACCATCCGTCCTGCTAGCATCCACACTAAGCAGTGTGCAAAAGCCTTCGTCCAGCAGCCGGGACAGCACAGTGTGGAGCAGTTACTGGGACTCCTGAATGAATGCTCTAAATACCACGGGCAACTCACTAGAGAGGCGGCCATGGGTCAAGGTTTCGATCGCCATCTTTTCGCCATGCGCTACTTGGCTAATTCGAAAGGAATGGCACTGCCCAGTCTGTACCAGGATCCTGCATATGCGGCCATAAACCACAACATCCTGTCTACCAGTACTCTGACTAGCCCTGCGGTCAGTCTGGGTGGCTTTGCTCCTGTGGTGCCTGATGGTTTTGGAGTGGGTTATGGGGTTCATGATGAATGGATTGGGTGCAACGTGTCCAGCTACCCTGCCAGAGATGTTCATGAGTTCCTTAGGTGTGTTCACAAGTCCTTGGAAGACATTTTTACAGTCCTTGATGGAAACCCCATTCATTGAAAGCACATTTAATATGATGAAGTTAAAGCACTTGTGAACTAAGCTGAATTTAGAGGATTTgtgttaataataacaatgtgttGAGTCTAGTTTAAATGTAGAACCTGAAGGTTAGAACTCATATGCTGTGCACTGAATTGATTGATGTGACTGCTCATTTCTAAGTTCATGCTTAATTAAGTGATGTAATGAACAAAAATGTTTATGACAGTATAGATAATTTACATTTACTGCATTGtgtaattactaaattaaattttctCCAAATGACAAAAAGAAATTCATCATAAAAAAGCTGAAAGACCTGTCCTGTGCCTTATAAGAAACACTGAAAtcaatactgtaaatattgtaaCAAAGCCTAATAAAACCATTTCAacagattttcaa

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG:

id description
ko00071 Fatty acid degradation
ko03320 PPAR signaling pathway
ko04714 Thermogenesis
ko05415 Diabetic cardiomyopathy
ko01006 Prenyltransferases

ZFIN:

id description
ZDB-GENE-030131-6719 Predicted to enable carnitine O-palmitoyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in liver. Human ortholog(s) of this gene implicated in brain disease; lipid metabolism disorder; and muscular disease. Orthologous to human CPT2 (carnitine palmitoyltransferase 2).

Ensembl:

ensembl_id ENSDART00000135938

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071137 lncRNA downstream 30423 21104997 ~ 21107023 (-) True XLOC_036396
TCONS_00071129 lncRNA downstream 65694 21071176 ~ 21071752 (-) True XLOC_036393
TCONS_00071126 lncRNA downstream 65747 21057899 ~ 21071699 (-) False XLOC_036393
TCONS_00072443 lncRNA downstream 92400 21025530 ~ 21045046 (-) True XLOC_036390
TCONS_00072441 lncRNA downstream 92402 20978591 ~ 21045044 (-) False XLOC_036390
TCONS_00072444 lncRNA upstream 102528 21245130 ~ 21255678 (-) True XLOC_036399
TCONS_00072445 lncRNA upstream 106242 21248844 ~ 21252842 (-) True XLOC_036400
TCONS_00071146 lncRNA upstream 227683 21370285 ~ 21372447 (-) True XLOC_036402
TCONS_00072446 lncRNA upstream 242762 21385364 ~ 21388511 (-) True XLOC_036403
TCONS_00072447 lncRNA upstream 293613 21436215 ~ 21502656 (-) True XLOC_036404
TCONS_00071136 mRNA downstream 27200 21104507 ~ 21110246 (-) False XLOC_036396
TCONS_00071135 mRNA downstream 27213 21104507 ~ 21110233 (-) False XLOC_036396
TCONS_00071133 mRNA downstream 33924 21095125 ~ 21103522 (-) False XLOC_036395
TCONS_00071132 mRNA downstream 34195 21095125 ~ 21103251 (-) False XLOC_036395
TCONS_00071134 mRNA downstream 34295 21099500 ~ 21103151 (-) True XLOC_036395
TCONS_00071142 mRNA upstream 23451 21166053 ~ 21184759 (-) True XLOC_036398
TCONS_00071143 mRNA upstream 122661 21265263 ~ 21268303 (-) True XLOC_036401
TCONS_00071144 mRNA upstream 224169 21366771 ~ 21372446 (-) False XLOC_036402
TCONS_00071145 mRNA upstream 226429 21369031 ~ 21372485 (-) False XLOC_036402
TCONS_00071151 mRNA upstream 835455 21978057 ~ 22274509 (-) False XLOC_036406
TCONS_00071115 other downstream 193674 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 292944 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071106 other downstream 299424 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071104 other downstream 722485 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071084 other downstream 1824031 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071158 other upstream 1141692 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071164 other upstream 1178245 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071166 other upstream 1199004 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071179 other upstream 1390969 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071180 other upstream 1393426 22536028 ~ 22538950 (-) True XLOC_036416

Expression Profile

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