RNA id: TCONS_00071132


Basic Information

Item Value
RNA id TCONS_00071132
length 2021
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_036395
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 21094884 ~ 21103522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGCGTTTCCTCATAGCTGCACCCACCGAGCTGCAGAACAGAAGCAGGCTCTGTTCGAAATCTGTGTTCCCGTCAAAAACACCATGGCTCAGCAACCGCTTCTGTCGCTGCCCGAGTTCCAGAGCGTCTCCACGGGCACTTTGGTGGTGAAGGAGCCGCTGAATTTCTGGGGAGGAGCGAGAGTGAAGCCGAGGGACACAAAGAACTCCGAGCCAGTATACGAGCCAGCAACTGGTCGTGTGCTGTGTGATATGATTCCTTGCGGAGAAGAGGAGGTAGATCAGGCTATTAAAAGTGCTCATTCTGCATACCTAAAATGGAGTCAATTATCAGGAATGGAGAGGTCCCGAATCATGCTGGAGGCTGCCAGAATTATCAGGGAGCGGAGAAATGCAATTGCAAAAGCAGAAGTGGCCAACAATGGCAAATCCATCACTGAGGCTGAGGTGGATATTGATGTTGCTTGGCAGTGCATCGAATACTATGCAGGCATTGCCCCCACACTGTCAGGTCAGCATATACAGCTTCCAGGAGGATCTTTTGCCTACACCAGAAGAGAGCCTTTGGGAGTGTGTGTTGGCATCGGTGCTTGGAACTACCCATTCCAGATCGCTGCCTGGAAATCAGCTCCAGCATTGGCCTGCGGTAATGCCATGGTGTTTAAACCGTCTCCCATGACCCCGGTGACTGCTGTCATGTTGGCAGAGATCTACAAAGAGGCTGGTGTCCCAGATGGACTTTTTAATGTGGTACAAGGAGGAGCTGAAACGGGAAGCCTGCTGTGTCACCATCCCATGGTGGCTAAAGTGTCCTTCACTGGTAGTGTTCCCACTGGAAAGAAGGTTATGGAAATGGCTGCTAAAAGTGTGAAGCAGGTGACTCTGGAGCTTGGAGGAAAGTCACCGCTGATCATCTTTAAGGATTGTGAGCTGGAGAATGCTATCAAAGGAGCCCTTATGGCCAACTTCCTCACCCAGGGAGAGGTGTGCTGCAATGGAACAAGGGTGTTTGTGCAGAGGGAGATCATGCCAAAGTTTTTGGAGGAAGTTGTGAAGAGGACCAAGGCCATCTCTGTGGGAGATCCTCTGTGTGAAGGAACACGCATGGGTGCTCTGATCAGCAAACCACACATGGAAAAAGTGCTGGGCTTCATCAAGCAAGCTAAAGAGCAGGGTGGAAAGGTTTTATGTGGAGGAGAACGATTTGTCCCCAATGATCCCAAACTGAAAGACGGATACTTTGTGTCTCCATGTGTGCTGGATAACTGCAGAGATGATATGACCTGTGTGAAGGAGGAGATCTTTGGCCCTGTGATGTCTGTTCTGCCCTTTGACACTGAAGAGGAAGTTCTTCAGAGAGCCAACAACACAACCTTTGGCTTGGCGTCTGGAGTCTTCACCAGggaTATTGCACGTGCCCACAGAGTTGCTGCGAACCTTCAAGCAGGAACCTGCTACATCAACAACTACAATGTCGGGCCTGTGGAAGTTCCTTTTGGAGGCTACAAGATGTCAGGTTTTGGAAGGGAGAACGGTACTGTGACCATTGAATATTACTCTCAGCTCAAGACTGTTGTGGTGGAGATGGGAGACGTGGAGAGCCTGTTTTAAGCTATTGTTAGGTTAACCACCAGCACTCCGTACCGCAATGTGATTTTTCCCAGTTTTCAGATCTGTAGCTCTGGCTTTGCAATAGAAGTCAATTACTAGAAGACTAGCTAAGTGCTGTACTGCTTTGACAGTCTATATTTATGTCACTCATTTCCATTGGGCCTCAATGTGTGAGAACGCTTGAAGTTACTTAACTAACCAAAGTATTTTCCAGATCcgttaaacatgtgaattttgatgTACTAACAGTTCAATCAAAAGCAAGTGCCTTTGGATATGTTTCTACTATACAAGTTTATTACATTCCAAGACTTGTTGTTTCACCGCTGCACCATGAAGAATTTGTATTACACTGGTGGTTTACAAGTTtcaatttgaaataaatataccTTGGCTTTCAAGAgtaataa

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0051289 protein homotetramerization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0045329 carnitine biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0047105 4-trimethylammoniobutyraldehyde dehydrogenase activity molecular_function
GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004029 aldehyde dehydrogenase (NAD+) activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function
GO:0019145 aminobutyraldehyde dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1257 Predicted to enable 4-trimethylammoniobutyraldehyde dehydrogenase activity and aminobutyraldehyde dehydrogenase activity. Predicted to be involved in cellular aldehyde metabolic process and protein homotetramerization. Predicted to be located in cytosol. Is expressed in gut; head mesenchyme; intestinal bulb; and liver. Orthologous to human ALDH9A1 (aldehyde dehydrogenase 9 family member A1).

Ensembl:

ensembl_id ENSDART00000137838

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071129 lncRNA downstream 23373 21071176 ~ 21071752 (-) True XLOC_036393
TCONS_00071126 lncRNA downstream 23426 21057899 ~ 21071699 (-) False XLOC_036393
TCONS_00072443 lncRNA downstream 50079 21025530 ~ 21045046 (-) True XLOC_036390
TCONS_00072441 lncRNA downstream 50081 20978591 ~ 21045044 (-) False XLOC_036390
TCONS_00071137 lncRNA upstream 1746 21104997 ~ 21107023 (-) True XLOC_036396
TCONS_00071141 lncRNA upstream 37801 21141052 ~ 21141883 (-) True XLOC_036397
TCONS_00072444 lncRNA upstream 141879 21245130 ~ 21255678 (-) True XLOC_036399
TCONS_00072445 lncRNA upstream 145593 21248844 ~ 21252842 (-) True XLOC_036400
TCONS_00071146 lncRNA upstream 267034 21370285 ~ 21372447 (-) True XLOC_036402
TCONS_00071130 mRNA downstream 3164 21082361 ~ 21091961 (-) True XLOC_036394
TCONS_00071125 mRNA downstream 23371 21056383 ~ 21071754 (-) False XLOC_036393
TCONS_00071128 mRNA downstream 23371 21058723 ~ 21071754 (-) False XLOC_036393
TCONS_00071124 mRNA downstream 23374 21055976 ~ 21071751 (-) False XLOC_036393
TCONS_00071135 mRNA upstream 1256 21104507 ~ 21110233 (-) False XLOC_036396
TCONS_00071136 mRNA upstream 1256 21104507 ~ 21110246 (-) False XLOC_036396
TCONS_00071138 mRNA upstream 34195 21137446 ~ 21142602 (-) False XLOC_036397
TCONS_00071139 mRNA upstream 34208 21137459 ~ 21142599 (-) False XLOC_036397
TCONS_00071140 mRNA upstream 37561 21140812 ~ 21142550 (-) False XLOC_036397
TCONS_00071115 other downstream 151353 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071108 other downstream 250623 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071106 other downstream 257103 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071104 other downstream 680164 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071084 other downstream 1781710 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071158 other upstream 1181043 22284294 ~ 22287211 (-) False XLOC_036407
TCONS_00071164 other upstream 1217596 22320847 ~ 22326703 (-) False XLOC_036408
TCONS_00071166 other upstream 1238355 22341606 ~ 22342321 (-) False XLOC_036409
TCONS_00071179 other upstream 1430320 22533571 ~ 22538676 (-) False XLOC_036416
TCONS_00071180 other upstream 1432777 22536028 ~ 22538950 (-) True XLOC_036416

Expression Profile

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