XLOC_036410


Basic Information

Item Value
gene id XLOC_036410
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22383250 ~ 22428019 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072448
ATTTGAGTTTTCAGTGTTGCATGATTCTTaagaaatcattcaaatattattGGTGCtgtaaaaataattcatattatgATTAGTTTTAAATCAGCTTTTGCtagttaatatttttgtatattcaAAAGAACaggatttatttaaaacaaaatattttgcaaCAATATATTagtctttttttaagtttttactgcagcttcagtgcaatacatttttgatttgcatgattttctttctattttactTACCACAAACCTATGAATGGTATTGTTTCTATTCACAAAATGCAAACAGCAACAATGATTGTAAAAAATGTTTGCCTTTCTGTGTTCTTTAatcttgtttcccccacagttcaaagacttgAATTTTAGAAAAACTGTATACAGTAAATTGGCAGTGTCACTGTCCCATCACTGCAAGAGCTGATAATTCTACTGTTGAGACCCTTAATAAGAGCAGCCGAATGAGACACAGACTTTCATGATCTGCACATCAGCATACTGCTTTTTGAAGTACCATGTGACACTGAAGTCTAAAGAAATGATGAATGCAGCTTTGCTTtcacaagaaaaaaatgaaaaaacaaaaaatataaccaTAAAAATAAGCTCCTTAAAGTACAATATTATTGAtcacatgtatttttattaaatatatgtagcCTTGGTGAGCAAATGTCACttcttttaaaacattcaaaatatatattaatgactAAAACAATTTATGTCACCGTCATTTTTGCAGCAACATCTAGTGTATGATTGTCAAAAGGGTTCCAGTTACttgacaattaaatatttaatgtaagaGCTAATGCTAATGTGCAGTGGGCTGAAAAAGTGTCCGATGCTAAGAGGCTTTGGCATGACATTAAAAAGGAAATTCATACTTAAAAACTCTCCAATGTGGCTAAATTATAACAATTCTAAAAGATGAGTGGGGAAAATCCCTCCACAGCGCTGTAGCAGATTAATTGTAAGTTACCAAAAATGCTAGATTGCAATTGTTGCTGCTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072448 True 1023 lncRNA 0.31 2 22383250 22428019

Neighbor

gene id symbol gene type direction distance location
XLOC_036409 smim1 coding downstream 40028 22341606 ~ 22343222 (-)
XLOC_036408 cep104 coding downstream 56506 22297813 ~ 22326744 (-)
XLOC_036407 si:ch211-147a11.3 coding downstream 94989 22283564 ~ 22288261 (-)
XLOC_036406 nphp4 coding downstream 108741 21978057 ~ 22274509 (-)
XLOC_036405 BX323830.1 coding downstream 469953 21723326 ~ 21913297 (-)
XLOC_036414 si:ch211-261n11.5 coding upstream 71343 22499362 ~ 22508055 (-)
XLOC_036415 apex2 coding upstream 81489 22509508 ~ 22515042 (-)
XLOC_036416 csde1 coding upstream 93710 22521729 ~ 22542545 (-)
XLOC_036417 porcnl coding upstream 116271 22544290 ~ 22558773 (-)
XLOC_036418 iqsec2a coding upstream 139344 22567363 ~ 22739757 (-)
XLOC_036404 NA non-coding downstream 880594 21436215 ~ 21502656 (-)
XLOC_036403 NA non-coding downstream 994739 21385364 ~ 21388511 (-)
XLOC_036399 NA non-coding downstream 1127572 21245130 ~ 21255678 (-)
XLOC_036420 BX072561.2 non-coding upstream 416681 22844700 ~ 22845798 (-)
XLOC_036421 NA non-coding upstream 433985 22862004 ~ 22867103 (-)
XLOC_036425 NA non-coding upstream 693494 23121513 ~ 23123787 (-)
XLOC_036426 NA non-coding upstream 706681 23134700 ~ 23137569 (-)
XLOC_036428 NA non-coding upstream 789479 23217498 ~ 23219956 (-)

Expression


Co-expression Network