XLOC_036414 (si:ch211-261n11.5)


Basic Information

Item Value
gene id XLOC_036414
gene name si:ch211-261n11.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22499362 ~ 22508055 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071170
CGTTCGCTCAGTGTTATAGATAAAATCTAACGGTTCGCTGAAGAAAACACGAGGTTTTTCTTGAGGTGTGATGTCTACGGATTGTCGAGATGGAGGGTGGAACTGGAGTCTACTACCAAGCAATGCCTGCAGTGGGACCAGACGGGAAAAATGTCATGAAGTTGATCCCTGTACAGAAAGTGAACGGACAGTTTTATCCGACCTCTCTTAACTCGTATAGAGATAATGTAGATCTACAGCTGAAAGCCTATGCAAAGCCTGTTCATCCCCCCAATGCCTCGACATCTCAAACCCAGCCTCGACTTCCTTCCCTTCAGGCCACAGCAGATGGACGTTATGTCCTTAAAACCTCACCAGAGGTCAGAACTTTATCTAACCTGGTCCGAACTCAACAAGGTGGAACAAATAACCTCATCATTCACAATCCAAAGCAAGTGCACATTTCTCCTTCAGCACACTCGGTatcccagtatacagtccagttATCTCCTCAACCCAGTCCAAAGAGCATGACAGCGGTCCAAACGTTGCCTGTAACCATAAAGTCGCCCGTTCTCCCAAACGGTCATTTCCTGGAGATCCCTCCAAATGCAAAAGTAAGAACAATGCCAGCAACTGCACTCCCGCAGTCCATCAAATGTCGCATATTGAACTCTGTGAATAACATCTCAAACCCTGACAAAACTCCACCAACTGTCGTGCTTGTTTCCCCTGTAAATTCAGTGAGGCTAAATTCTAACCAGCAAGTAGTTTCGCTCCCAAAGCAGAGTCAAGTACAAAAGACCCTCTCTCTAAATCCCCCTACAAACCTGCAAAATCCTGTTTGTGTTCCTAAAACCAATGAAGTGAATACTCCCATTAAATGGGTCATCCAAGAGGGAACTGGCGCATCTGCTCGTTGCCTTATACCCGTTTCATCACAGAATGTAAACTCTGACAGCGTAAAAACAGTCACACATGTCAACTCAAATGAAATCGCAGCAAGCAAACCCACAGTTCCTCAAACCATCCTAGAAAAAATCACCCCGGGCAAAGACAATGCGCTAGTCATGTGCAATGGGAAGGTCTACTTTGTGGCCAGGAAGAATTCGGAAATTGCTAAGGATGTGTTGATCTGCGAAGGAGAGAAACGAGGGATTCTGAGCATCTCTCCTGCTCTCCCAGCCAGCTCTGCACTAGCATCAACCTCTTCTAAACCAGACCCCAAACCAAGCGTAAGTGAAGTCATTGACCTCTGTGATGATGACGACGAAGAGACGTCCACATGTCTGGGAGGAGCTCCGGGGAATCTGCCTACTGCCAGTCAAACAGAGGCAGATGAGAGCGATGAAGAATCCAATGTTATATTTGTTTCATATATTCCACCAAAGACGAGTGCAAAAGCAGCAAGTTCAGACTCTCAGAAGGCTTGTGAAGAACATGCAGAGCAAAGAAGAAAATCTGTTACACAGAAGAAAGGAGAAAATGTGGCATATGCAGAAGTGGATAGTGATAGCGGTATTGATAATCTGAGTGACGTGATGATGGATGAGCTGGTCAAGGAAAATGACGTGGCTGACAAAAACTTGAGTTTTGTTTCTGAAAGTGTGAATATAGAGGAAGAGAAAGAAGTCGTTAATGAAAGTTCATCGGAAGCGAGATGTCAAGATAATGCAGTTGTCATTGAATATGCCAGAGTATTGGAACAGCCCCAAAACCTCTGTAATCCAACTACTGAGAACATTGAAAAGGCTTTTAAAAATGCTGTTCCAAGTCATCAGCCCAAGAGTGACCGTGAACTGAGAAAAGAGTTTGGCATCACCTCTTATATCCAAATTtgcttgcaaaaaacaaaaccgACTGTGGCGAGTGATCAGCAGAAAGAGAGACTAATCATAAACAAACGCACATTGGATGGCCTTCGTAAGGTGATCCAGGATTCAAAGCTGCAGTCAAAAATCCAGCAGATGATCCAGGCTCCCCACCCTAAAACAGAGGAGGATGAAGTTCTGAAGGCCAAAAGGCAAAAGCAAGAGCAGGAAGAGACTGAAAATACTCCCGTTTTAAGCACCACAAACACAATACACATCTCTGAATGCTCAGACATTCCCATGGGAAGCAGTTTGGTCTCAAAGACCTGTCAAGAAGAGGTTTGTTCACCATCAGAATCTGCAGCCAACAAGGATCACACACGATCTGAAATGGCAGCAGATGTTTCTGGTAGCACATGCGGTCTCACTCCCTCACTCCCACAAAAAGCCCCACAGACTGCTAGTCCTCTCTTCTCTCCTTTCCCTGCAAGGAATGTTCCACCTCGTTTAAAAAAAGGTAAGATGTGCACGGCTTGTCCCTGTGGGACAATTTTAGGGGCTTCAGAATCCACTTCATCACATGAGAAAACAAATCCATGTACTGACTCAAATAAAGGGACAAAAACCATCTGCTCGAATAAACCACCAGGAGAAAATTGTCAAGCTCAGAAACCTCAAGCTAAAGATCCTGTTAAAAAATCAGAAAAGAAACCGTCAGGAAAAAGTCCACTTAAAGACTTGGCTCCGTTAGAAAGCTCTATTAGTGAAACATTACTCAACGTTTCCTCAGTGAACGTTACCTCAAGTGCTGCTGCTGTTGGCACAAACCAAACTGCTGAAGCTCCTTCAGTCCAACCTGAAATCAGTAACATGTGGAGCAGAAACACCAATGCTGAAACATCACAGCAAAACACTGGACAATGTGAAAGCGATTCAAACTACACCAGCATGCCTTTGTCTAAAAACAATTTAGGACCCAAAATGGACAAATTTCCGATGCAAGAGTTGTACTCGTTGGAAACGCTGGATGCTGAGGAGATCAAACGTCTGGAGAGAATCAAGCGTTTGAAGGATCTGCTGAAGGAGAAGGAAGCTGCGCTGCAGCGGATGCAGAACATGAACATTTAGCCTGACACCATCATGCGTCAGAGACTATCAGAAAACTAATGTACATAGTTTGTACAGAATCGCTATTTACTAACATttccttttaatgcattttattgcatttgttttattcagtCTTTGAGTACATGTCAATTGTTGTGTGTTTGTCTTATTTATAGGTGTTCAGAGTATATTAAGCAACTTTAAATAGCATCTTTGTAAGTTTTCTGTGCCTTCGTCACTACTTGATTTTCTATAGTCTAATAATAGATGTTTTTGAACTTTTGTGatttgaaaaaaaactttttgggaAACCTTTTGCTAAGCAGATGATGAAAGGAAAGCTGTTACATTATTGGAGTAATACCTTTTTCATGTTTGTATTTTGCTACAGAACTGCTCACTgacctgtaaatatttttaaatgtgaactaTTTCCAG

Function

symbol description
si:ch211-261n11.5 Predicted to enable retinoic acid receptor binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human LRIF1 (ligand dependent nuclear receptor interacting factor 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042974 retinoic acid receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-202 Predicted to enable retinoic acid receptor binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human LRIF1 (ligand dependent nuclear receptor interacting factor 1).

Ensembl:

ensembl_id ENSDARG00000069696

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071170 True 3338 mRNA 0.43 4 22499362 22508055

Neighbor

gene id symbol gene type direction distance location
XLOC_036413 NA coding downstream 24720 22405875 ~ 22474642 (-)
XLOC_036411 NA coding downstream 65252 22384742 ~ 22434110 (-)
XLOC_036410 NA coding downstream 71343 22383250 ~ 22428019 (-)
XLOC_036412 zgc:158862 coding downstream 104702 22393908 ~ 22394660 (-)
XLOC_036409 smim1 coding downstream 156140 22341606 ~ 22343222 (-)
XLOC_036415 apex2 coding upstream 1453 22509508 ~ 22515042 (-)
XLOC_036416 csde1 coding upstream 13674 22521729 ~ 22542545 (-)
XLOC_036417 porcnl coding upstream 36235 22544290 ~ 22558773 (-)
XLOC_036418 iqsec2a coding upstream 59308 22567363 ~ 22739757 (-)
XLOC_036419 magixa coding upstream 253799 22761854 ~ 22838364 (-)
XLOC_036405 BX323830.1 non-coding downstream 586065 21723326 ~ 21913297 (-)
XLOC_036420 BX072561.2 non-coding upstream 336645 22844700 ~ 22845798 (-)
XLOC_036421 NA non-coding upstream 353949 22862004 ~ 22867103 (-)
XLOC_036425 NA non-coding upstream 613458 23121513 ~ 23123787 (-)
XLOC_036426 NA non-coding upstream 626645 23134700 ~ 23137569 (-)
XLOC_036428 NA non-coding upstream 709443 23217498 ~ 23219956 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_00517865_00522058 NA coding CI01000010 null 517512 ~ 522058 (-)