CI01000010_00517865_00522058


Basic Information

Item Value
gene id CI01000010_00517865_00522058
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 517512 ~ 522058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00517865_00522058.mRNA
ATGCCTGCAGTGGGACCAGATGGGAAAAACGTCATGAAGTTGATCCCTGTCCAGAAAGTGAACGGACAGTTTTATCAGGCGCCATTTAATACAGAAAGAGACAATGTGGATCTACAACTGAAAGCTTTTGCAAAACCTGTTCATACACCTGCTGCCTCTTCATCTCAAACACAGACTCGACTTCCCTCCCTTCAGCCCATCGCAGATGGACGGGTCGTCCTAAAAACCCTGCCAGAGTTCAGAACTTTATCTAACGCCATCAAAACTCAACCCAGTGGAACTAATAACTTCACCATTCAGAATCCAAAGCAAGTGCATGTTCCTCTTGCCCCACAATCGGTTTCCCACTATACAGTCCAGTTACCTCCTCAACCCAATGGACAGGGCATGATGGCTGTTCAAACGCTGCCTGTTACCGTAAAGTCACCTGCTCTCCCAAACGGTCATTTCCTGCAGATCCCACCGAATGCAAAAGTTAGGACTCTCCCGGCAACTGCGCTCCCGCAGTCCATAAAATGCCGGATAATGAACTCTGTAAATAACACCCCTAACCTTGGGAAAGGTCCACCAACCGTTGTGCTTGTGTCCCCTGTGAACTCTGTGAAGCTAACTTCTGACCAGCAAATGGTTTTGCTTACAAAGCCAAGTCAAATACAAAAGACCCTGTCTCAAAATCCTCCTGCAAACTTGCAAACACCTGTTTGTGTTCCTAAAACTAATGAAGAAGTGAACACTCCCATTAAATGGGTTGTCCAGGAGGGAACAGGCGCAACCGCTCCTTGCCTTGTACCTTTATCGACACCGAACATCAGCTCTGACAGCTTAAAAGCGGTCAAGCATGTCAACTCAGTCGGTACGGCAAATGAAATCACGGCAAGTAAAGCTATGCCTCCTCAGACCAGCCAAGAAAAGATCACCCCAGGAAAGGACAACGCATTGGTCATGTGCAATGGGAAAGTCTATTTTGTGGCCAAGAAAAATTCAGAGATCGCCAAGGATGTGATGATCAGCGAAGGTGGAAAAAAGATGTTAGTCAGCACTTCTCCTGCCCTCCCCGCCAGCTCCGTTCTAGGGTCAAACTCTTCTAAGCGAGAACCCAAAAAAAATGTAAGCGAAATCATTGATCTCTGTGATGACGATGAGGAGACGTCCACGTGCCTGGGAGGCGCCCCGGGTAATTTGCCCACACCGAGTCAAACAGAGGTGGATGAGAGCGATGAAGACTCTAATGTAATATTTGTGTCATATATTCCACCAAAGTCAGTTGAAAAAGTGGCAAAATCTGCCTCTCAGAACAAATATGAAGAAGTTCAACACACAGAGATCAACACAAAATCTGTCTATCTGAATGAAGGGAAAAAAACAGCACAAGATGGTATTTTGGATAATCGTTCAGCCAAAATGGGTGATAACAAAATGAATGTGGATGAGCAGGTCAAGAAAAATGTGAGTTGTTTTTTTGAAAATATGAATATGGAGGCAGATAAAGACTTGGAGACTATAAGTCAACCAGAGACAAGATGTCAAGCTGAAATAGCTGAAACAGTCGCTGAAACAGTCAACGTGTTGGAACAGCCCCAAAATGTCTGTATTCAAACCATTGATAATACCGAAAAGGTCATTGGAAATCCTGATCAGAGTTGTCACCCCAAGAGTGACTGTCAGCTGAGAAAAGAATTCGGCATTACCTCTGACATACAGATTTGCTTGCAAAGAACAAAGCCGGCTGTGAAGCCAGATCAACAAACAGAGAGACTTATCATAAACAAACGCACGTTAGACGGCCTTCGTAAAGTCATCCAGGATTCAAAGCTGCAGTCAAAAATACAGCAGATGATGCAGGTTACCTACACAAAAGCGGAGGAGGATGAAGGTCTGAAGGTCAAAAGAAAAAAGGAGGAGCAGGATGAGAGTTGTGATATTCCCTCACTAAGCACCACATACAACATTTCACCTGTCTCTAAATGCTCAGTTGTTCCCATGGAAAACAGTTGTCAAGAAGAGGTTTATTCACCAACAGAATCTATAGCCAATAAGGTTCATATGCAATCTGAAATGCCAGCAGATTGTACTGGTACTCCCTCACCTGCGCAAAACGCAACACAGACTGCTAGTCATCCCTTCTTACCTTCCTCTGCAAGGAAGATGCCACCACGCTCTAAAAAAGGTAAGGTGTGTACGGCCTGTCCCTGTGGGACTGTTTTAGGGGTTGCAGAAGCCACTTCGTCACTCCATCCACAGGAGAAACCGAATCCATGTACTGTTGCTGAATCACACAAAGGGACAAAAAGAAGCTGCTTAAATAAAACCCCAGTGGAGAGCCGCCAACCTCAGAGAAGTCAACCAAAAGATCCTGTTCAGAAAGCAATGAAGAAACAGTTATCAAGAAGTCCACGTAAAGATAACACTCCATTAGAAAGCTCTACTAGTGAATCATCTCACATCTCCTCACCTAATAGTTCATTAAGTGCTTCCTCTTCATCCAGTTTACAGGACTGCAACCACCAGATTACACTGTCCTCAAGTGGAATAAAATGCGGTAACACGTCGGGCAGCCACACAGATGCTGAAACATCCCAGCAGACAGCATCAAACGACCCCATCATGCCATTCTCTAACAAACACCCAGGTCCCAAAATAGACAACTTTCCAACCCAAGTGCTCTACTCGTTGGAAACACTGGATGCTGAGGAGATAAAGCGGCAAGAGAGGATCAAACGTTTAAAGGATATTCTGAAGGAGAAGGAGGCTGCGCTGGAGCGGATGCAACAGAGCATGAATGTTTAGTCATGTCTGTTTGTGTTTAAAAGACTGTACACTGCATGAGAAACTGAATATGACTGAATACCAGCATTAAATGTTTAAGGAAAAATGTACAGCATCTTTATTAAGTTTTTTCCCTTTTTTAACATATTTACTGGATCTCAGTTTCCAGTTGTTTTATTCAATCTTTGAGTACCTAAGCATTTGTGTTGTGTGTTTGTCTTATTTATAGTTGTTTGCAATACATTTAAGCAACTTTATATGACATCTTTTTTTACATCTTTGTATGATTTATGTGCCTTCATTAATACTTGTTTTTCTGTAGTTCAGTTCATAATGTAACAGCCTAGTTTTAACTAAAAAAGTAATTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00517865_00522058.mRNA True 3140 mRNA 0.43 3 517512 522058

Neighbor

gene id symbol gene type direction distance location
CI01000010_00421834_00427873 NA coding downstream 89369 421237 ~ 428143 (-)
CI01000010_00335493_00356496 CEP104 coding downstream 161016 335440 ~ 356496 (-)
CI01000010_00327845_00329442 CUNH1ORF174 coding downstream 188070 327227 ~ 329442 (-)
CI01000010_00154875_00293942 NPHP4 coding downstream 223570 154875 ~ 293942 (-)
CI01000010_00524503_00527976 APEX2 coding upstream 2341 524399 ~ 527976 (-)
CI01000010_00532752_00544586 CSDE1 coding upstream 10559 532617 ~ 544586 (-)
CI01000010_00553512_00562038 NA coding upstream 31355 553413 ~ 562038 (-)
CI01000010_00601570_00615159 IQSEC2 coding upstream 79512 601570 ~ 615159 (-)
CI01000010_00653231_00678240 NA coding upstream 131127 653185 ~ 679693 (-)
G60943 NA non-coding downstream 14824 486382 ~ 502688 (-)
G60952 NA non-coding downstream 77596 439195 ~ 439916 (-)
G61016 NA non-coding downstream 120128 397070 ~ 397384 (-)
G61013 NA non-coding downstream 131161 384872 ~ 386351 (-)
G60953 NA non-coding downstream 133531 382064 ~ 383981 (-)
G61035 NA non-coding upstream 42550 564608 ~ 564828 (-)
G61050 NA non-coding upstream 56611 578669 ~ 578948 (-)
G61051 NA non-coding upstream 56986 579044 ~ 579766 (-)
G61055 NA non-coding upstream 62758 584816 ~ 585087 (-)
G61043 NA non-coding upstream 74068 596126 ~ 596685 (-)
G61045 NA other upstream 50695 572753 ~ 575511 (-)
G61888 NA other upstream 722411 1244469 ~ 1246018 (-)
G61965 NA other upstream 902367 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 3007612 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3368011 3890069 ~ 3899058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036414 si:ch211-261n11.5 coding NC_007119.7 CM002892.2 22499362 ~ 22508055 (-)