CI01000010_00524503_00527976 (APEX2)


Basic Information

Item Value
gene id CI01000010_00524503_00527976
gene name APEX2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 524399 ~ 527976 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00524503_00527976.mRNA
ATGAAAATTGTAACATGGAACATAAACGGGATACGAACATTTAAAAATGGCATCAAGAAAACTCTGGATTCATTCGATGCCGATATAATCTGCGTCCAAGAAACTAAAGTTACCCGTGACCTGTTGGATGAGAAGACAGCGATTGTTGATGGCTACAATTCATACTTTAGTTTTAGCCGAGGACGAAGTGGATACTCGGGTGTCGCGACCTACTGTAAAGATACCGCTACTCCATTCCTGGCCGAAGAAGGATTGACGGGTCTGCTCGCCAATCAGGGAGAGGCTGTTGGTTGCTATAGTGACCAGGAAGAGTTGTCCAGTGAGGAGCTTCTGGCACTAGACAATGAAGGAAGGGCTGTTATCACCCAGCATCACTTCATTGGCACAGATGGACCACAGAAGCTGACAGTTATCAATGTTTATTGTCCCCGAGCTGACCCAGACAAACCTGAGAGAAAACAGTACAAGCTGCAGTTTTACCAACTCCTCCAGTGCAGAGCTGAAGCCATCTTGAGCTCAGGGAGTCATGTGATTGTTTTGGGTGATGTCAACACCTCTCACAGACCCATAGACCACTGTGATCCAGATGATGTGGATAACTTTGAAGATAATCCTGGGAGGAAGTGGCTGGATCATTTCCTGTTCGAAACAGCAGAAAATGGAAATACTGAAGATGAATTTGCAGACATATCCCAGAAATCTACCTCTGGTGGCAAGTTTGTTGACTCCTTCCGCCATTTTCACCCAAAGCGCTCTAATGCTTTCACATGCTGGTCCACTCTCACGGGTGCCAGGCAGACCAACTACGGCACACGCATCGACTACATCTTCTCTGACCGCCCTCTGGTGGAGACTGCCTTTATTGGTGTGGACATTATGCCAGAGGTGGAGGGATCGGATCATTGTCCTGTATGGGCGCAGCTCAGCTGTACCCTCCAGTCTAGTCCCAAGTGCCCGCCCCTGTGCACACGCCACATGCCAGAGTTCACCGGCAGACAGCAGAAACTTTCACGCTTCTTAGTGAAAGTTCCAGAGAAACTTAGTGTTTCTAAAGGCTGTGAAGAGAGTCTACCTGGATCACAGGATTCTGGGGAAATTCGGGAAAACCTGAATCCTGTAGTACAGGGGAACAGTGTTGCAAAGAAGAGACCTACAGATAGAGAAGCAGACACAAATGCACACAAAGCCAAAAGAAGCAAGCAGACGAAAACCGAAAGTAATGCTAAAGGTAGTCTTTTAGCTTTCTTTAAGCCTAAACAAACAGCGTTGATGCTTTCAAGTGGGAACTTGAGCCCGAAACAAGAAGAATCCTCTCAGGATGGCCCGGGTAGTGAGAGCGACACTAAAAGCTGCCCCAGCGATGTGCAAAAGGAGACAAATCTCTCCAAGGTTACGGAAATGGAGAATGAAAATCAGGATGAAGTGGAAGGAGAATCTACATCCATAGACAAGTCTAAGGACTGTAAGAAAGGGCCATGCGCTGGTTTTTGGAAAACCATTTTGCATGGGCCTCCTCAGCCGCCACTTTGTAAATCACACAACGAGCCCTGTGTTTTACGGACTGTGAAAAAAGCAGGACCTAATTTAGGCCGGCAATTTTTTGTATGTGCCCGTCCTCAAGGCCACGCCTCCAATCCTCAGGCAAGGTGCAATTTTTTCGCCTGGGTAGAAAAAGGAAAATAGATTAAAGTCAAGGAATCTTTATGCATACTGTATTTCATGTTTTGATTCTATGTGTTTGTTTATATATACCATTTTTATTGTTCAACTAACAAAAGAGAAATAAA

Function

symbol description
apex2 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be located in mitochondrion. Predicted to be active in nucleus. Orthologous to human APEX2 (apurinic/apyrimidinic endodeoxyribonuclease 2).

NR:

description
LOC797209 protein

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10772 APEX2; AP endonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00524503_00527976.mRNA True 1787 mRNA 0.46 6 524399 527976

Neighbor

gene id symbol gene type direction distance location
CI01000010_00517865_00522058 NA coding downstream 2341 517512 ~ 522058 (-)
CI01000010_00421834_00427873 NA coding downstream 96256 421237 ~ 428143 (-)
CI01000010_00335493_00356496 CEP104 coding downstream 167903 335440 ~ 356496 (-)
CI01000010_00327845_00329442 CUNH1ORF174 coding downstream 194957 327227 ~ 329442 (-)
CI01000010_00154875_00293942 NPHP4 coding downstream 230457 154875 ~ 293942 (-)
CI01000010_00532752_00544586 CSDE1 coding upstream 4641 532617 ~ 544586 (-)
CI01000010_00553512_00562038 NA coding upstream 25437 553413 ~ 562038 (-)
CI01000010_00601570_00615159 IQSEC2 coding upstream 73594 601570 ~ 615159 (-)
CI01000010_00653231_00678240 NA coding upstream 125209 653185 ~ 679693 (-)
CI01000010_00691767_00731442 MAGIXA, MAGIX coding upstream 163791 691767 ~ 731442 (-)
G60943 NA non-coding downstream 21711 486382 ~ 502688 (-)
G60952 NA non-coding downstream 84483 439195 ~ 439916 (-)
G61016 NA non-coding downstream 127015 397070 ~ 397384 (-)
G61013 NA non-coding downstream 138048 384872 ~ 386351 (-)
G60953 NA non-coding downstream 140418 382064 ~ 383981 (-)
G61035 NA non-coding upstream 36632 564608 ~ 564828 (-)
G61050 NA non-coding upstream 50693 578669 ~ 578948 (-)
G61051 NA non-coding upstream 51068 579044 ~ 579766 (-)
G61055 NA non-coding upstream 56840 584816 ~ 585087 (-)
G61043 NA non-coding upstream 68150 596126 ~ 596685 (-)
G61045 NA other upstream 44777 572753 ~ 575511 (-)
G61888 NA other upstream 716493 1244469 ~ 1246018 (-)
G61965 NA other upstream 896449 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 3001694 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3362093 3890069 ~ 3899058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036415 apex2 coding NC_007119.7 CM002892.2 22509508 ~ 22515042 (-)
bowfin (Amia calva) AMCG00009623 NA coding CM030126.1 CM030126.1 42857803 ~ 42863632 (-)