CI01000010_00601570_00615159 (IQSEC2)


Basic Information

Item Value
gene id CI01000010_00601570_00615159
gene name IQSEC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 601570 ~ 615159 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00601570_00615159.mRNA
AACAGAACCACAGGCACACAGCAGGACACTGACTCACCAGGACACTGTCCTTCAGACAGAGAGGAGTACTCGCATGCAGATGACGCCTTCAATAAACAGGTGACCTCTCTGGCTGACTCTATGGACGACACTCTCACGTGTCAGTCAGGCCGAGGAGATTCTCAAGATGGTGGTGGGGGAGGCGGCGAGGAGAGCGAGGATTTCGGCGAGTGTGTGTGGAGCAACAAACCTACTTTGCGTAGGGGGGTCTTGGGGGAGCAAGAGCGTCTAGGGGTCATGCATGAGGACAGCACAGCCACCTCGTACAGTGACGTCACGCTTTATATGGATGACGGCATGCCGTGTTCTCCGCTATCTATCGAGCGGGTTCCCTCTAGCACAGACACCGAGTACTGGGGTGTCAGCAGTGGGGTTGGAGGCCGTGAAGACAGCCGGGAAACGGAGGGTGGTGGGAGCAATAACAGCCGGCGGAGCACGCCTTGCACAGAATGCAGAGATTTCCGCTTGCGTGGGTCACACCTTCCTGTTCTTACCATAGAACCACCTAGCGACAGCTCCGTTGACATGAGCGACCGTTCCGATCGAGGCTCCCTCAGCAGACAGCTGCTTTACGAGCAGGAGCCTACGACAGGTGGATCACCCCAAGGGACTCTCAAACACAACCCTACACCTCGCACGCCCAATCCGTGCGCGGCACAGGGCCAGACGCGACCCCCGGGTCGCCCCATCCCATCCCCTCTGCCTACACACTTACCGCACCACACTATGATGCACCACCATCACCACCCACATCTTCACCATCCACTGCACCACCACCCTTTGCCACACATCCATCATCCCTACCCAGACCCCACGTCTCCCTCACCCACCCAACCTCCACTCACACCCCTGTCTTCCTCATCCTCCGCGCCCCTGCCCACTACTGGCCTGGAGCACTCGGATGGGGACAATGACTCCCTGAACTCCACCACCAACTCCAACGAAACCATTAACTGCAGCTCAGGCTCTTCGTCTAGGGACAGTCTAAGAGAACCATTGCCTCCTCTAGGAAAACAGACCTATCAGAGAGAGAGCAGGCATAGCTGGGACTCACCCGCCTTCAACAATGATGTGGTGCAGAGAAGGCAATACCGCATTGGACTCAACCTCTTCAACAAGAAACCAGAGAAGGGGATCCAGTATTTGATAGAGAGGGGTTTTGTATCAGACACACCTGTGGGCATTGCACGCTTCATCCTGGAGAGAAAAGGCCTAAGTAGACAGATGATCGGGGAGTTTCTGGGAAATCGACAAAAACAGTTCAACAAGGATGTGTTGGACTGTGTGTTGGATGAGATGGATTTCTCGGGTATGGATCTGGATGATGCCCTGAGGAAGTTTCAGGCTCAGATTAAGGTTCAGGGGGAAGCCCAGAAGGTTGAGAGACTGGTAGAGGCCTTCAGTCAGAGATACTGCGTATGCAACCCTGCACTCGTCCGCCAGTTTCAGAACCCAGACACTATCTTCATCCTGGCATTTGCCATCATCCTCCTCAACACAGACATGTACAGCCCCAACGTCAAAGCTGAGAGGAAGATGAAGCTGGAGGATTTTATCAAGAACCTTAGAGGAGTGGATAATGGACAGGACATTCCCAGGGATATGTTAGTGGGCATCTACCAGCGCATTCAGAAATGGGAGCTCAGGACAAACGATGACCACGTGTCTCAAGTGCAAGCTGTGGAGAGGGTCATCGTGGGCAAGAAACCTGTGCTTTCTCTGCCACATCGCAGGCTAGTGTGCTGTTGTCAGCTGTATGAAGTCCCTGACCCCAATCGACCGCAGAGGAGTGGAGTTCACCAGCGGGAGGTCTTCCTCTTTAATGACCTGCTAGTGGTAACAAAGATTTTTCAGAAGAAGAAGACGTCTGTGACGTACAGTTTCAGACAGTCTTTTCCCTTGGTGGAGATGCAGGTTCATATGTTCCAGAACTCCTACTATCCTCACGGTATCAGACTGACATCTGCAATGCCCGGCAGTGAGCGTAAGGTTCTGATTGTGTTCAACGCGCCGAGCCAGCAGGACCGAACACGCTTCACCAGCGATCTGCGTGAGAGCGTCGCTGAGGTTCAGGATATGGAGAAATACCGTGTAGAGTCCGAGTTAGAGAAGCAGAAAGGTGTGATGCGTCCAGGGCTCCTGAGTGGAGATGTGGGCGGGGTTGGCGGAATGAAGACTGAGGCTGTGAACGGCACTCTGGGAAGGCCCAGTCTGGATGACACGTACGCAGCAGGGGAGGGGCTCAAACGAACAGCACTTAGCTCCTCACTGAGAGACCTCTCTGAAACAGGAAAGCGAGGCCGTAGAAACAGTGTTGGCTCTTTGGATAGTACCATTGAAGGATCCATCATTAACAGTCCTCAGCCACATCAGCGTATGCCCATGGGGGGCGCTGTTCCCAGCTGCTACGGGCTGGAAGACTACCGGCCTCACCGCCCCATCCTGAGCCCCGGAGTAGGGGTGGGGGGTGGGCCGGGGCAGCTTCACAACGCCGTAGGCAATATTGGGGGGGTCGCTGGCATCAACGATCGAGGTGGGGGGCCGGGGAGCAGTTCTGGAGGGAGCAATTCCGGTTCCTTCCTGGGCTCCCTGTTTGGGAGCAAGCGCGCCAAACCCCCTGCTCCCCTTACTCCCCCCGGGCCACATTACCCGGCTCCCGTGCCACCTCCTACTACAGGAGGGCCGCCGCCTCCATCCCCCTCCGCCCTCAGCCAGTCAGACCCTGGTGGCCCATCCAAGATCCAAGCGCTGCACGCTCAGTACTGTCACAACAACTTTGGGCAGCCTCCGCCCCCCTACCACCATCATCATCGGTTCCACATGCAGGTGGCCGCCCCTGGCCATCCGCCCGCTATCCATCACACCCTACAACGAGGGTCCCTCCCGCGACGCGGACCGCCCGCTCCTTCACACGCCCAGCTCCAACAGCAACTATCCCATCATGCTATGCAGCAAGGCCGCTACGCCAATATGGCCTGCACCCCTCCGCCTCTGTCCCCGCATTCACCCCATTCGCCCATCGGCCCTTTCAACTTCTACCACGTGCACCCCAATACCATACGCCACGTACGGGTGCCCGGTCCTACCGGCAAGCTTCCTCTTACTCTGCGCCATCCGCCATCACCGCCCGGCACATACCCCAGGGCACCGCCC

Function

symbol description
iqsec2 Enables guanyl-nucleotide exchange factor activity. Involved in modulation of chemical synaptic transmission and regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Is active in Schaffer collateral - CA1 synapse. Implicated in non-syndromic X-linked intellectual disability 1.

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K12495 IQSEC; IQ motif and SEC7 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00601570_00615159.mRNA True 3192 mRNA 0.57 14 601570 615159

Neighbor

gene id symbol gene type direction distance location
CI01000010_00553512_00562038 NA coding downstream 39532 553413 ~ 562038 (-)
CI01000010_00532752_00544586 CSDE1 coding downstream 56984 532617 ~ 544586 (-)
CI01000010_00524503_00527976 APEX2 coding downstream 73594 524399 ~ 527976 (-)
CI01000010_00517865_00522058 NA coding downstream 79512 517512 ~ 522058 (-)
CI01000010_00421834_00427873 NA coding downstream 173427 421237 ~ 428143 (-)
CI01000010_00653231_00678240 NA coding upstream 38026 653185 ~ 679693 (-)
CI01000010_00691767_00731442 MAGIXA, MAGIX coding upstream 76608 691767 ~ 731442 (-)
CI01000010_00810923_00813645 NA coding upstream 195288 810447 ~ 813870 (-)
CI01000010_00861290_00870510 NA coding upstream 245321 860480 ~ 871146 (-)
CI01000010_00902754_00903080 NA coding upstream 287358 902517 ~ 903230 (-)
G61043 NA non-coding downstream 4885 596126 ~ 596685 (-)
G61055 NA non-coding downstream 16483 584816 ~ 585087 (-)
G61051 NA non-coding downstream 21804 579044 ~ 579766 (-)
G61050 NA non-coding downstream 22622 578669 ~ 578948 (-)
G61035 NA non-coding downstream 36742 564608 ~ 564828 (-)
G61075 NA non-coding upstream 165648 780807 ~ 783522 (-)
G61098 NA non-coding upstream 174036 789195 ~ 789490 (-)
G61104 NA non-coding upstream 189036 804195 ~ 804412 (-)
G61105 NA non-coding upstream 189911 805070 ~ 805362 (-)
G61115 NA non-coding upstream 223303 838462 ~ 840123 (-)
G61045 NA other downstream 26059 572753 ~ 575511 (-)
G61888 NA other upstream 629310 1244469 ~ 1246018 (-)
G61965 NA other upstream 809266 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 2914511 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3274910 3890069 ~ 3899058 (-)
G64237 NA other upstream 3614791 4229950 ~ 4236416 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009782 LOC108266008,LOC103385383 misc CM030126.1 CM030126.1 45944632 ~ 45997710 (+)