CI01000010_00653231_00678240


Basic Information

Item Value
gene id CI01000010_00653231_00678240
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 653185 ~ 679693 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00653231_00678240.mRNA
AGGAACGAAAGATATAAGGGAATGGGATAATGAAGAAGAGGGAGACCATACAGACAGAGACTGGATAGATTGAGAGAGAGAGATGATGGATGGATGGATGGATGGATGGATGGATGAACAAAGAGAAAGAGATGGATGACAGATGGATTGAAGGATAGATACACAGACAACTAGAGAAAGAGATGGATGGATAGATAGATATCACAATTAAGATGCATCAAAATGCACAGAATTGTGCAGCTGAATAATTAAGGCTTTGTGTGGGAGAGTAAGAAATTAAATGGATTTCTCTCCATCCCTCTTTTTTTTTTTTCCCTCTGCAACTCTTTTCTCCTCCGCATGCACCTCTTACATAAACACAGTGGATATCAGTATGCTCTATATGAGCAAAGCGTGCCCAATTCGCCCATGTAGAGCGCAGACTCTCATGCGCGAACACATTTTCCATGAACTTTAAGAAGAGGGCATAGTGAGCTGATGAGCCAGAAAGGCATGGATTGCTAAAGATTCATCCTGGACCAGCAGAACCATGTAAACTTTAGATAGCATTCTTGAGCATCATAGGTGATTCTCACTAGTTTTGTAGTACATTGTGGGAATTTGTCACTGGAATAGCTTGGACAATAAAACGGTCCTTAAAATGACTGCCTCCCTTGATAGTACACTGACTATTGAACTAGGGAGATGATTGAGATGCTCTAGGTTGTATAACACAGCTAGCACAAGCTTATGCATGGCGTGCTGCATCGTATTAGATTCTATTAAAAAACTGTCCATACAGATAATTCTACCCTGAATGTGGCATCACTGCATACTGCTACTAAATAGATAAATTAAGCTCTAATGATAAAGTAAACCACAACATACTAGTGGTCTGTCCTTTTCCTGCATGTGCTTAGCACATCCCTTTCACTCACACACAGTTCAGCTGTGACTAAGGCACGGAGAGAGAGAAAGAGAGGGCAGGACGTGTGGGTGGAAGTAAGAAAAAAATGGATGGTTTAATGTGGGTGCTGAAAGGAGTGAGAGCATGAGAGTGATTCAGCACATGAAACGTCCTAAAACTGCTGTAAAAGGCAAAAGCTACTTGTCCGCGGTTTTTGCTGCAGTAGAAATTAAAACCTCAAATAAAATATTAATATTGGGCACTGTCATCATTTTAAGATCGCGTTAGCCGGGCAAAGCCTGATTTTATATTCATGTCGTAGGCTAGGCTACCTGTTGCTGTTTGAAATTTAAATTTGGGCTGCACTGAATGCGAAATATTGCCCCAATGTGTAAATCCGTTCTTGCTTTTTCTGCACCACACAGCCTACGGTTTGAGTAGTGAGGTGTATAGGAGAGAGAGAGAAAGAGAGAGAGGGAAAGCGAGAGCGCGCGCGAGAAACTGCACTCATTTTGGCTCAGCGCAAGGAGCCACTCTCAGTCGAACTGAATGTTACCGCGTTCCAAAATGGCCGACCACGGGGACACAGTTTCCCCGGCATGTTCCTCTAGCGCTACACGCTCGGACCAACATTTCTTGCGTTGGAACGTCGAATTTGGAGATTTAAACGACTTAGATGTCTTCGTTTTGGGACGTATTCTACATATCGCCTCATTATCGCGCAGCTGTAAGCGTTGGAGACGCTCGATTGTCTTCAAGGACTGTCTGGGCAATAAGTGTGAAACCGCTCTCTGGAATATGAGTCATGAATATACAGCCAGAAAACAGCTGCAGTGCTTCAACTCCACATTTCAAAGAGAAACGGAAAAGGATGTGCACCAGAGAAATGGACGAAAAGGAAATCGGCTTTCCTTCCTGTTTAATGGATATTTGCTGACTTGGCTTTTTGGGGTGCATCCTTACCTTGGACTTGAGGTGTCCATCAACATGGATGCTGGCCAGGGCAGCCCAGAGAGCCCTAACCGGGCAGTGGAGTACCTGCTGGAGCTCAATAACATCATTGAGAGCCAACAGAAGCTTCTGGAAACTCAACGGCGGCGCATCGAGGAACTGGAAGTGCAGCTGGACCGACTCAGCCAGGAAAACAAAGACCTGAGGCTGGACCGACAGCCCTGCCCACCCCCACCTCCACCTCCCATCCACCCTGTCCAGCCACCGACGTCCCACGCTGCAACCTCCACTGCCATTTACGCCAATCTGAGCCACAACAGCGGGCCTATCCCAATACCCATCCCGGCTCCGGCGCCCCCGCCCCCACCACCACCCGTGCCACCACGGGATCGCCGTGTCAATGCCAACACGCACACAAGGCTTGGCCAAAGCCTGTCAGCTGGACCCAATTCCACGGAGAGAGAAAGGGACCGAGACAGGGAACGAGAAAGAGATGGTGCTGCTACCAGTTTGGGAAGCTCTCTGCAGAAACACGAGAGTTTTCCCATACTAGATTCTAGCACCGTGCTAAAGCACAAAATGAAGAGAGCAGTGTGCGATATCCGCCTCTGTCTGTTAGGGGCCGCACCATGTTTCCCTCGACTTGCATCAGCCCTTCCAGATGAGTCCAGAGAGACTTGCAAAGCAGCAGAAGATGGTAATACAGGGCTCTTGAGGTGCTTGTTCACCGAAAGAGATGTGATGAGGCATTCTCTCTCCTTTGCAGTGGGATGGGGCATGTCAGCGGGTTTTAAGCATAGGGAACAAGGGAGCGGATTGAGACACAGCCCTGGTCTGTACGCTGTAATACTCCTCTATACAGCTTCTACCTCTGTCCACACCAGTCTGACCGCAAACAGCCACTCCACCCACCACCAGTACTGCTGCCCCGCGCGGCTCCTTCTGCCCAAGCCGCCCTGCGCCCTCCCCCCTGCCCGGCACCCGGAGCAGGCAAGAGAGGATGAGGACGACGACATCGCCCATCAGTTCTGTTGCCCTGCCTCTGAGTGCAGTAGCCCTTCCTCTAGCCTAAATGCAGCTGGTCTTAATTTAACTGAAACCTATGAAACAAAATACAAAAAGATCCTTTGCACTAGCATGTCATCTGCATCCTACCACGTCTCGGAAATGGACAAACATCCTGTACGTGACTGAAACGAGCGAAAGGGAATGAAAACCATTGCTGTACAGTATTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00653231_00678240.mRNA True 3077 mRNA 0.48 10 653185 679693

Neighbor

gene id symbol gene type direction distance location
CI01000010_00601570_00615159 IQSEC2 coding downstream 38026 601570 ~ 615159 (-)
CI01000010_00553512_00562038 NA coding downstream 91147 553413 ~ 562038 (-)
CI01000010_00532752_00544586 CSDE1 coding downstream 108599 532617 ~ 544586 (-)
CI01000010_00524503_00527976 APEX2 coding downstream 125209 524399 ~ 527976 (-)
CI01000010_00517865_00522058 NA coding downstream 131127 517512 ~ 522058 (-)
CI01000010_00691767_00731442 MAGIXA, MAGIX coding upstream 12074 691767 ~ 731442 (-)
CI01000010_00810923_00813645 NA coding upstream 130754 810447 ~ 813870 (-)
CI01000010_00861290_00870510 NA coding upstream 180787 860480 ~ 871146 (-)
CI01000010_00902754_00903080 NA coding upstream 222824 902517 ~ 903230 (-)
CI01000010_00929453_00930078 NA coding upstream 249368 929061 ~ 930537 (-)
G61043 NA non-coding downstream 56500 596126 ~ 596685 (-)
G61055 NA non-coding downstream 68098 584816 ~ 585087 (-)
G61051 NA non-coding downstream 73419 579044 ~ 579766 (-)
G61050 NA non-coding downstream 74237 578669 ~ 578948 (-)
G61035 NA non-coding downstream 88357 564608 ~ 564828 (-)
G61075 NA non-coding upstream 101114 780807 ~ 783522 (-)
G61098 NA non-coding upstream 109502 789195 ~ 789490 (-)
G61104 NA non-coding upstream 124502 804195 ~ 804412 (-)
G61105 NA non-coding upstream 125377 805070 ~ 805362 (-)
G61115 NA non-coding upstream 158769 838462 ~ 840123 (-)
G61045 NA other downstream 77674 572753 ~ 575511 (-)
G61888 NA other upstream 564776 1244469 ~ 1246018 (-)
G61965 NA other upstream 744732 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 2849977 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3210376 3890069 ~ 3899058 (-)
G64237 NA other upstream 3550257 4229950 ~ 4236416 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G68339 NA non-coding CI01000012 null 130927 ~ 135917 (+)
eurasian perch (Perca fluviatilis) G57908 NA misc NC_053116.1 CM020913.1 43848304 ~ 43884435 (-)