CI01000010_00335493_00356496 (CEP104)


Basic Information

Item Value
gene id CI01000010_00335493_00356496
gene name CEP104
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 335440 ~ 356496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00335493_00356496.mRNA
AGCTCAGGAACGGGATGCCTCATAAGATAGGCTTTACTGTGATCAGCTGGTCTGGTCATGAAGGAAACTACAGTGCCAAAAAGCTGATGGTCCATGCGCCCACCGTCACTGGCTGGAGATCCACCAGGTTCTGTCCATTTCCTCAGGAAATCATTCTGCAGTTGGTTGAAAGATGTCGCATAAGGAAACTCCAGCTACTGGCCCATCAGTATCTGATCCCGTCCAAGATCGAGTTCCACATTGGAGATAGACTGCCAGAGTCCAGCTCGCATCAGCAGGATCATATTCTCCATAGATTGGGGTATGTGTCTCTGTCTGACAACGAGAAGACTGGTTTCAGAGCCAGAGAGCTGAAGTCAGTTCATGTCGATGCTGTTGGGTCTTACCTGAAGCTCACTTTTCACAGAAACCATGTTAATCAGTACAACATTTACAATCAGGTTGCATTGGTGGCTCTAAATATTTTGGGTGACCCTGTGGATGGAAATGCCATTGGGACAGCACTAAGCAGAGATCAGCTGATTGATCAATATCTAAACAACAGCCAACATAGCTCAGCATTGGATGGCACATACACTGGGCTCTCGAGTTATAAATGTGAATCTATCTCGCCCCTCGATGACTTGGCGTTTGACATGTATCAGGACCCTGAGGTGGCACACATCATTCGGCTACTGGACCAGAAAAAACAGGACATGGTTCGGGAGGAAAGATTTGATCTGGCCAAAAAACTTAAACAAGCTATTGCAGACCTGCAAAAGGTGGGTGAACGTTTGGGCCGGTATGATGTGGAGAAACACAGTGCCATAGAGCGAGAGGACTATGACATAGCCAAGCAGAAAAAGGAACAAATGGAGGCTTACAGGCTCACAGTGTACCAGCAGCTGGAGCTTCACAACATGCTGGACATCAGTCAAATTCACAGAATTTCTGAGCTTTCCAACTCTGAATTCCCCTCTCCACGTGCTGGGACACAAAAACACACGCCTCATCCAGGGGACTCACCCACGAAGAGAAGACAGGGACAGCATGTGAAGGAGACACATGAGCAGGACACTTCAAAACCAGCTAGCACCAAACATACAGTCGCCCCAACACCCCTCTCTCCTCCTCACGCTTCTAAGATTGATACCAGCTCCCTTCCTTATGATGAGAGGCCTTTACCTGCTCTTAGGAAGAGGTTGAATGATCAACCAGTCAGTGAGCTTGACGAGATGCCCCCTCAGACAGACACAAGCACTCCACGTAGCCCTGGGTCCTCAGGACAACCAGAACCACTCACAGAGAAAGCTCAGAGAGAGGCCAGTCTGCCCATTGAGATCTATGGAGAGACTCTGGTGGCAGGGGCCTATTCAAAGACGTGGTCTTACAGGGAGGATGCTTTGCTGACAGTCTACAAGAAACTGATGGAGGTTCCACCCGGTACCCCAAAAGCAGAACTACGGAGCATGACAAGAGCAGCTGTGTTCCTCTGCAAGAAAGCACTCACAGATAAAGTGTCATCTGTATTTCTTGCATCTCTGAATCTGCTTCGAATGATTCTGAGTGAGTTTATTCCCAACCATCAGCTGGGCAAATCTGAGATCAGTCACTGTGTGGAACAGACTTGGAATAATCTGCTCTCTAGGACTGGAGACTCAACCCTGAGACTCAGAACACCAGCTGTCACCTTCATACAGATAAACAGACACATAACCAGTGTTACAACAACTGTGTATGATCTTTTAGCAGATTGTATGATTTATGACAAACTGGCGATGCAGAATGTTTCCCAGGTAGTTCGACTTGTTCAGGAAATGGCTTCATTTAAGGAGGTGAGAGCTCTGCAGGTGGTTCCTTTGGAGCTCGTCAAGCCCATGCAGAGCAGTGTACCCGCTAGACTGGCACTGAGCAGACTGGAACTGTTGGAGAAGCTTCTAGAACAGCTGGGCACCAGGAACTCTGGCTTCACTCTCGACAACATCATGCGGTTTCTGGCAGGTGGATTGGAGCACAGCGCTGCCTCAGTGCGTGAGCTCTCTGTGAGAGTCGTACAGGCTATGTACCGTCTTCACGGTAAAGCAGTTATGAATTATCTTCCACCTGATGACACCAGCACACGTAAAAACGTCCTCTACAAGAACCTTTTCGACTCGCTCACCAAGTTAGACGGAAACAACGTCAATATGCAGAAGTCAAAAAAAGTGTCAGAACGGGAAGACGGTGAGAGAGAGAAAGAGGAAATCAGGAGCTTACAGGAGCAGCTTGCAGTGCTGAAGGAGATCAGTGAGAAAGGAAAGGAAAATACCAAAGAACCTGAGAAAAAAGCTGAGAAGGCGGCCAAATCAGGTGTTAAGAAGGTAAACCAGTCTGTCCCTGCTGATGCGAAAGGCAGCCAATCATCTGCAGCTAACTACCTAGACAATCTGTGTATTTTCTGTGGGGAGAGAGATGTGTCATTCACTGAGGACGGACTCGACCTGCACTACTGGAAACACTGCCCGATGCTGCAGCGTTGCCTTCAGTGCAGACAGGTCGTGGAGATTGCGAGTCTGACAGAGCACTTGCTGACAGAGTGTGAGCGGAGGGCAGATTTCACCCAGTGTCCTCTCTGCTCCGAAGCCCTCACCCAAGATAAGCTAACTGAGCATGCTCAGAGCACTGCTTGCAATCCACCAACTTCTGGAGAAAATTGTAATCACTGTCCTCTCTGCCATGAAAACTTCGCCTCAGGGGAGGAGGCCTGGAAGTCTCACCTCATGGGACCTGAGGGTTGTAAACAGAACTCACGGAGGAGAGCGGTACAGCAGAGCACTCTCTCACACGCACAAGGAAAGACCGTCAGCAGCACAGGTGTAGCTAGAACAACAATGGTCATTTCTGAGTCCAAGGCTCGAGGGCAGGGAAGAGGCAGTCGCATACCCGCTCCTGCTTCCAGAAACAACAAACACACCAGAATTCCTCCAGGCAAGGCCTCTACCCTCCGACTACAACAGGCGTGACACACAGATAGCATTGCTGGAATAATCTAATGTGTGTGATTCATTGCAAAAAA

Function

symbol description
cep104 Acts upstream of or within cilium assembly; cranial nerve development; and heart looping. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in Joubert syndrome 25. Orthologous to human CEP104 (centrosomal protein 104).

GO: NA

KEGG:

id description
K16458 CEP104; centrosomal protein CEP104

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00335493_00356496.mRNA True 3034 mRNA 0.49 22 335440 356496

Neighbor

gene id symbol gene type direction distance location
CI01000010_00327845_00329442 CUNH1ORF174 coding downstream 5998 327227 ~ 329442 (-)
CI01000010_00154875_00293942 NPHP4 coding downstream 41498 154875 ~ 293942 (-)
CI01000010_00421834_00427873 NA coding upstream 64741 421237 ~ 428143 (-)
CI01000010_00517865_00522058 NA coding upstream 161016 517512 ~ 522058 (-)
CI01000010_00524503_00527976 APEX2 coding upstream 167903 524399 ~ 527976 (-)
CI01000010_00532752_00544586 CSDE1 coding upstream 176121 532617 ~ 544586 (-)
CI01000010_00553512_00562038 NA coding upstream 196917 553413 ~ 562038 (-)
G61011 NA non-coding downstream 13237 320408 ~ 322203 (-)
G61007 NA non-coding downstream 64087 271108 ~ 271353 (-)
G60923 NA non-coding downstream 117273 129719 ~ 218167 (-)
G60572 NA non-coding downstream 230770 103909 ~ 104670 (-)
G60571 NA non-coding downstream 311848 22004 ~ 23592 (-)
G60958 NA non-coding upstream 9391 365887 ~ 367025 (-)
G60953 NA non-coding upstream 25568 382064 ~ 383981 (-)
G61013 NA non-coding upstream 28376 384872 ~ 386351 (-)
G61016 NA non-coding upstream 40574 397070 ~ 397384 (-)
G60952 NA non-coding upstream 82699 439195 ~ 439916 (-)
G61045 NA other upstream 216257 572753 ~ 575511 (-)
G61888 NA other upstream 887973 1244469 ~ 1246018 (-)
G61965 NA other upstream 1067929 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 3173174 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3533573 3890069 ~ 3899058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location