XLOC_036429 (ptk6a)


Basic Information

Item Value
gene id XLOC_036429
gene name ptk6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23227100 ~ 23240156 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071204
TCATAGATTCACACTCAGATGAAATGTCCCAGGAGGAGGTGTGCTGCTCGTGTCCCGGGCTGAGGGCGTTTTGTCAGGGATTGTTCACGTCGCCTGACAAGACTGAGGCTGAAAAACCAACAAACACGGCCAAACAGACGGTGAATGTCCCGAATCCATCCCGCGCCTCGGCATGTGAGCCCGGGAGTGAGCTCTACAAAGCACTGTGGTCCTACAAAGCTCGCGGGGCGGATGAGCTTTCCTTCCAGGAGGGAGAACAGTTCCGCATCTGCGAGCGCCAGGGCGAGTGGTGGACTGCGCTCAAACTGGGCAGAGATGGAGCGGTCACCGGGAGGGGCTTTGTTCCAAATCATTTCCTGGCGAGAAGACAAACGGTGAAAGAGCAACCCTGGTACTTTGGCACACTGAACCGGTTTGAGACCGAGATTTTGCTTCTGGCTCCAGAGAATGATGTTGGAGCTTTTCTGGTACGACACAGCGAAAAGGACAACATAGGTTATGTTTTATCAGTGTTATCGGGTGACAGAAGCAGGGAAGTGAAACATATTAAGATCCACCAGAATCAGAATGAAAGTTTTTATCTTGATAAGAGTCAAACGTTTCAAAGCCTGGAGAAACTGGTGGATTACTACTGGAAGTATTCCCTGGACGGTGACTCTTTTCTCAAACAACCCTGCAGACGGCCAGAACCAAAGCCAAAGGATCTTTCACACAGCACAGTAAATGACTGGGAATTACCTAAGGAAGAGTTCACACTCGAAGAGGAGCTTGGTAAAGGATTCTTTGCTGATGTTTATCGTGGAAAATGGAAAGGCATGGTCAACGTGGCCATTAAGATCCTCAAAAATGACTCTATCAACCACAGGGAGTTCATGTTGGagacacaaatattaaaaaagctCAGGCACAAACACCTCATCGCACTCttcgctgtctgcacaagctcaAGCCCCTTCTACATCATCACTGAACTTATGGAAAAAGGCGACCTGCTCAGTTTGCTCAAAGgtAAGGAGGGCCAGGACCTGAATGCACAGATGCTGACAGAAATGGCATCCCAGGTAGCTGATGGGATGGCGTACCTTGAGGAGCAGAACAGCATCCACAGAGACCTGGCGGCTCGCAATGTTCTAGTGGGAGCCAACTACATCTGTAAAGTGGCTGACTTAGGTCTAGCTCGAATCGTCAAAGAGTCAGTTTACTCTTCAGAAGATGCACAAATACCGTATAAGTGGTCTGCTCCTGAAGCCATCAGCCATGGAAGGTTCTCCAACAAATCTGACGTCTGGTCATTCGGAGTCCTGCTATATGAAATGTTCACCTATGGTGGAGTCCCATATCCAGCCTTCTCAAATATCGAGGTGTACAACATGATCACGTCGGGGTACAGAATGCCGGCGCCCCCCAATTGCCCATCCCACATCTATGACATAATGCTGATGTGTTGGAGATATTCGGCTGAGGAAAGGCCAGATTTCAGTGAACTATTACGTCTTCTTGAAGACTATTGTGCTCCATGCACGGACCAGAACACAGAGAGCTGCAGTGGCACATAAGATCCAAAAGGAGGCGTCAGTTAGCAATGCTGAGCAAAGTCAAGTGAGTGGGAACATGCCATCAATAGTTGTTTGTGATACACTTCAGTTTTTATGCACAAAGACCTTTTCCACACATTGCTTTGCAGCTTTATACAGTATTCCtgtattttatttactcatttttgtGCTtactttctaatttaatttaaggaCATGTTCTAAGGACAAGGTGAGATGAAGGTGTGGTGACACTAGCCATTTAACATACATTGTAACTGTATAGTTGAGTTGACCCTATGAATGAATCATCATTGAAACATAAAAGTGTGATGTcaagaaatattttaattaaaggttAAAGGTTTAACATGCAAAACAATACAAGATTAAAGTattaaaattggaaaaaaaattcagCTAAAATATTATGGACAATCCTCTATCAGCATTTACCTTAATGTTTGGGAGTTCCCTGATGTCAAGTTATATTCTCCTTATCACT

Function

symbol description
ptk6a Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human PTK6 (protein tyrosine kinase 6).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-117 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human PTK6 (protein tyrosine kinase 6).

Ensembl:

ensembl_id ENSDARG00000017947

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071204 True 2040 mRNA 0.45 8 23227100 23240156

Neighbor

gene id symbol gene type direction distance location
XLOC_036428 NA coding downstream 7144 23217498 ~ 23219956 (-)
XLOC_036427 si:ch211-196c10.15 coding downstream 32692 23190986 ~ 23194408 (-)
XLOC_036426 NA coding downstream 89531 23134700 ~ 23137569 (-)
XLOC_036425 NA coding downstream 103313 23121513 ~ 23123787 (-)
XLOC_036424 si:dkey-70p6.1 coding downstream 145433 23040727 ~ 23081667 (-)
XLOC_036430 NA coding upstream 706 23240862 ~ 23250204 (-)
XLOC_036431 nol4la coding upstream 12694 23252850 ~ 23328264 (-)
XLOC_036432 NA coding upstream 147728 23387884 ~ 23390242 (-)
XLOC_036433 gpr173 coding upstream 174867 23415023 ~ 23416362 (-)
XLOC_036434 NA coding upstream 313871 23554027 ~ 23557922 (-)
XLOC_036421 NA non-coding downstream 359997 22862004 ~ 22867103 (-)
XLOC_036420 BX072561.2 non-coding downstream 381302 22844700 ~ 22845798 (-)
XLOC_036444 NA non-coding upstream 952543 24192699 ~ 24215822 (-)
XLOC_036446 NA non-coding upstream 1057215 24297371 ~ 24297670 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_00952202_00958971 PTK6 coding CI01000010 null 951892 ~ 959383 (-)