XLOC_036522 (prf1.5)


Basic Information

Item Value
gene id XLOC_036522
gene name prf1.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 29701428 ~ 29706882 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071350
GACATCATCATGGACACCAATAAATGTGTTTCCCTCACATTCCTTTGTATTTGTCTGATGTTGGCACACTGGGACTCAAGTTCAGCTTGTCACACTGGCTCTCAGACGGAATGTGAAAAAGCTCCATTTGTGCCTGGCTACAATCTGGCAGGAGAAGGCTTTGATGTTGTCAAGATGCGTCGTAAAGGTGCCTTTCTGATAAATGTCAAGTCACACATAGACAACGGTACCTGTACCATCTGCAAAAACCGCTTTCAAGGAGGGCAGATGCAGAAACTCCCCTCAGCCGTGTTGGACTGGCGACCCTTCAGCCGCTGCAGCAAACAGCTTTCTAGTGCTCTTCATCATTCTGTCGACTCCCTTATGAAGAGTTCAACGTCACTTGTTAATAATAACTGGGAAATGGATCTTAGCCTGGATGACATGGGAAAGGTGATTTTTGGAGGGAGTCGATCAGATATTGCTCAATTTGCCCATTCTCAGAATACAATGGATAAGGCAACCTTTGCCCTTCATGAGATCAGCTGTACATACTACAGTTACAGAATAACAGACAACCCAGAGCTCAGCGCTGAATTCTCAAAACATCTCCAGAAGCTTCCGGCACAGTATGATGCACAAACAAAACCTTTGTACCGAAGGACTATTGAAACATATGGCACTCACTACATACGCCAAGTCCATCTGGGTGGGCGAGTGAGGCGGGTCACAGCTTTTCGAACATGTCTTGCAACCCTGAAGGGCTTCTCGGAGACCGATATCAAAAACTGTCTAAATGTGGAGTTAAAAATCACTTTGGGGTTCTTGCCAGGCAATGCCTCGCTTTCCAACAAATGCTCTCAAATACTTAAGGATAATCTGAGCATGGGTTTCTACCAGGGCTTCATGACACACAAGACAGAGGTTCTGGGAGGAGAGAAATACTTCCCAGACCTTGTTTTAAGCCAAAGCCCAGCTGAAGCTTACTCAAACTGGATGATGAGCTTGCATAACAACCCTGACGTTATTTCATATGCTATTTTCCCTCTCCATCATCTGGTGGCAGATCCTGAGGTTAGTTCCAACCTAAAAATAGCAGTAACTGAATATATTGAAGAGAACATGATTTCTGTAGACCACAAGGAGAATCAAGGATGCTCTCAAACACCAAATCTGGATCATAACTGCTGTCCTATGAGAGCCGGTCGTGGCACATTAATAGTGTTAGTGCAGAGAGCTGCAGGACTGAAAGCTGATCTCTTCACACGCACTGATGGTTATGTCAAAGTCTGGTATAACTTCATGTATGAGGAGACTGAGGTGGTTATGGACAATAATGATCCTGAGTGGAATATCAGCTATGATTTGGGATCGGTTGAGTTTGGTCATGAACTCATATTTGAGGTGTGGGACAGTGATGTGATTTATAATGACATGGTGGGGAGATGTGTGGTCAGTCCTGAACGTGGGATTCACTCACACAGCTGTAAATTAAAGAGAGGTGTCCTTTATTTCACCTACAAGGCTTCTTGTGATGCTCATCTGACTGGACCCAGGTGTAGCAGATATTCACCAAAACTGTGAGACCTCTGTATTTGTATAGAACAAACAACTTACAGGCCAAACatgattagaaaataaataattttaagacTTCTATTTGA

Function

symbol description
prf1.5 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis. Is expressed in gill; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

GO:

id name namespace
GO:0019835 cytolysis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-3 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis. Is expressed in gill; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

Ensembl:

ensembl_id ENSDARG00000037598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071350 True 1643 mRNA 0.44 2 29701428 29706882

Neighbor

gene id symbol gene type direction distance location
XLOC_036520 AL928845.1 coding downstream 3146 29688511 ~ 29698282 (-)
XLOC_036521 NA coding downstream 7478 29691710 ~ 29693950 (-)
XLOC_036519 prf1.6 coding downstream 24126 29670527 ~ 29677302 (-)
XLOC_036518 mpeg1.3 coding downstream 43257 29655948 ~ 29658171 (-)
XLOC_036517 AL807792.1 coding downstream 65505 29581495 ~ 29635923 (-)
XLOC_036523 mpeg1.1 coding upstream 3228 29710110 ~ 29713621 (-)
XLOC_036524 si:ch211-103n10.5 coding upstream 11810 29718692 ~ 29719393 (-)
XLOC_036525 slc20a2 coding upstream 63216 29770098 ~ 29851706 (-)
XLOC_036526 NA coding upstream 146347 29853229 ~ 29855017 (-)
XLOC_036527 ercc6l2 coding upstream 191833 29898715 ~ 29930821 (-)
XLOC_036516 NA non-coding downstream 973421 28726874 ~ 28728007 (-)
XLOC_036514 NA non-coding downstream 1154752 28528329 ~ 28546676 (-)
XLOC_036529 dre-mir-24-3 non-coding upstream 455610 30162492 ~ 30162633 (-)
XLOC_036530 dre-mir-27b non-coding upstream 460553 30167435 ~ 30167525 (-)
XLOC_036531 NA non-coding upstream 460748 30167630 ~ 30167704 (-)
XLOC_036536 NA non-coding upstream 1213067 30919949 ~ 30921272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000347_01313969_01318436 PRF1.5 coding CI01000347 null 1313879 ~ 1318630 (-)