XLOC_003665 (AL954137.1)


Basic Information

Item Value
gene id XLOC_003665
gene name AL954137.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40573943 ~ 40578255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007122
atggtagagtggccagacggaagccactcctgcCTGGAATTTcacaaaaggcatctgaaggactctcagaccataagaaacaaaattctctggtctgatgagactaaaattgaactctttggagtgaacaccaggcgttacgtttggagaaaaccaggcagcGCGAATACCAtcccaacagtgaagcatggtggtggcagcattatgctgtggggatcaggaactggaagactagtcaggatagagggaaagatgaatgcatcatgttatgccccatatggtgatgcagaagtctccaaaacctga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110662

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007122 True 306 mRNA 0.47 4 40573943 40578255

Neighbor

gene id symbol gene type direction distance location
XLOC_003662 NA coding upstream 139863 40220055 ~ 40434080 (+)
XLOC_003663 si:dkey-207b20.2 coding upstream 262197 40306579 ~ 40311746 (+)
XLOC_003661 si:ch211-193i15.1 coding upstream 358389 40208239 ~ 40215554 (+)
XLOC_003660 si:dkey-264d12.5 coding upstream 405565 40148181 ~ 40168378 (+)
XLOC_003659 NA coding upstream 457297 40111481 ~ 40116646 (+)
XLOC_003666 AL954137.2 coding downstream 39641 40617896 ~ 40641787 (+)
XLOC_003667 slc45a1 coding downstream 71157 40649412 ~ 40674070 (+)
XLOC_003668 errfi1a coding downstream 234335 40812590 ~ 40847615 (+)
XLOC_003669 NA coding downstream 286700 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 coding downstream 310925 40889180 ~ 40889294 (+)
XLOC_003369 CR854846.2 misc upstream 24450861 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27861947 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27879680 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27888344 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27893915 12679732 ~ 12680028 (+)
XLOC_003655 NA non-coding upstream 647071 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 1094676 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 1283309 39287369 ~ 39290634 (+)
XLOC_003671 NA non-coding downstream 313426 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding downstream 319071 40897326 ~ 40899889 (+)
XLOC_003676 CABZ01087025.2 non-coding downstream 614074 41192329 ~ 41201272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G427157 NA non-coding NC_048569.1 CM023223.2 64708978 ~ 64709770 (+)
striped catfish (Pangasianodon hypophthalmus) G407650 NA non-coding NC_047624.1 CM018570.1 3413950 ~ 3415159 (-)